View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_12 (Length: 321)
Name: NF16756_low_12
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 41917938 - 41918234
Alignment:
| Q |
11 |
gaagcaaaggaaaagttatgttagaaagaccgccaacactcatgaaaacaacactccaaaaccttcaactccgaagcagagaaaaagttatgttagaaag |
110 |
Q |
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| T |
41917938 |
gaagcagaggaaaagttatgttagaaagaccgccaacactcatgacaacaacactccaaaaccttcaactccgaaacagaggaaaagttatgttagaaag |
41918037 |
T |
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| Q |
111 |
actgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatttcaaagattcaaaggtttatc |
210 |
Q |
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| T |
41918038 |
actgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatttcaaagattcaaaggtttatc |
41918137 |
T |
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| Q |
211 |
agggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtcttcattgtcaggtttatg |
307 |
Q |
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| T |
41918138 |
agggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtcttcattgtcaggtttatg |
41918234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 41917917 - 41917973
Alignment:
| Q |
62 |
cactccaaaaccttcaactccgaagcagagaaaaagttatgttagaaagactgccaa |
118 |
Q |
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| T |
41917917 |
cactccaaaaccatcaactccgaagcagaggaaaagttatgttagaaagaccgccaa |
41917973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 60 - 299
Target Start/End: Original strand, 1686863 - 1687102
Alignment:
| Q |
60 |
aacactccaaaaccttcaactccgaagcagagaaaaagttatgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggag |
159 |
Q |
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| T |
1686863 |
aacactcccaaacctgtaactccgaagcagaggaaaagttatgttagaaagagtgctaagacttgtgagtgtcaacgaccattatttgttgatgatggaa |
1686962 |
T |
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| Q |
160 |
attccatctctttcccatttttggaatatttcaaagattcaaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtata |
259 |
Q |
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| T |
1686963 |
attccatctctttaccatttttgttaaatttcaacaatacaaagattgagaagagtggatttgagagttcaaccataactaatgtatctgctatcgaata |
1687062 |
T |
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| Q |
260 |
caattcggtacaaagttatcagaaaatgtcttcattgtca |
299 |
Q |
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| T |
1687063 |
caattcactacaaagttaccaaaaaatgacttcattgtca |
1687102 |
T |
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