View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_2 (Length: 448)
Name: NF16756_low_2
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 191 - 398
Target Start/End: Original strand, 21691599 - 21691807
Alignment:
| Q |
191 |
gggatttcgtgttgggtcagaattttgtaatttttcattgtttctctgatcatgagttgatg-tggtgtagatttaatataggaatttgttgttgaggca |
289 |
Q |
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| T |
21691599 |
gggatttcgtgatgggtcggaattttgtaatttttcattgtttctgtgatcatgagttgatggtggtgtagatttaatagaggaatttgttgttgaggca |
21691698 |
T |
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| Q |
290 |
attagtttggttttttgggttaataggttgatatctttgtgaatattcatgttgggaagtgttgttgatagtgggttgcagaaaaaagtggtttgttcaa |
389 |
Q |
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| T |
21691699 |
attagtttggttttttgggttaataggttaatatatttgtgaatattcatgttaggaagtgttgttgatagtgggttacagaaaaaagtggtttgttcaa |
21691798 |
T |
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| Q |
390 |
attatgcta |
398 |
Q |
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||||||||| |
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| T |
21691799 |
attatgcta |
21691807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 21692446 - 21692539
Alignment:
| Q |
250 |
atgtggtgtagattt-aatataggaatttgttgttgaggcaattagtttggttttttgggttaataggttgatatctttgtgaatattcatgtt |
342 |
Q |
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| T |
21692446 |
atgtggtgtatattttaataaaggaatttttcgttgaggcaattagtttggttttttgggttaagatgttgatatctttgtgaatattcatgtt |
21692539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 21691425 - 21691487
Alignment:
| Q |
25 |
gtgatttgaattattttttagttttgaattctagattgtgattgtggagattgtgaaaacgtg |
87 |
Q |
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| T |
21691425 |
gtgatttgaattattttttagttttgaattctggattgtgattgtggagattgtgaaaacgtg |
21691487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 21692227 - 21692268
Alignment:
| Q |
46 |
ttttgaattctagattgtgattgtggagattgtgaaaacgtg |
87 |
Q |
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| T |
21692227 |
ttttgaattctgggttgtgattgtggagatggtgaaaacgtg |
21692268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 355
Target Start/End: Complemental strand, 11667133 - 11666982
Alignment:
| Q |
210 |
gaattttgtaatttttcattgtttctctgatcatgagttgatg----tgg-tgtagatttaa-tataggaatttgttgttgaggcaattagtttggtttt |
303 |
Q |
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| T |
11667133 |
gaattttgtaatttttcattgtttatgtgatcacaaggtgatggtggtggatgtagattttagtagatgaatttgatgttgaggcaattagtttggtttt |
11667034 |
T |
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| Q |
304 |
ttgggttaataggttgatatctttgtgaatattcatgttgggaagtgttgtt |
355 |
Q |
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| T |
11667033 |
ttaggttaagaggttgatatgtttgtgaaaattcatgttgagaagtgttgtt |
11666982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 355
Target Start/End: Complemental strand, 11670288 - 11670138
Alignment:
| Q |
210 |
gaattttgtaatttttcattgtttctctgatcatgagttgatg----tgg-tgtagatttaa-tataggaatttgttgttgaggcaattagtttggtttt |
303 |
Q |
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|||||||||||||||||||||||| | ||||||| || ||||| ||| ||||||||| | || | ||||||| |||||||||||||||||||||||| |
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| T |
11670288 |
gaattttgtaatttttcattgtttttgtgatcattaggtgatggtggtggatgtagattttagtagatgaatttgatgttgaggcaattagtttggtttt |
11670189 |
T |
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| Q |
304 |
ttgggttaataggttgatatctttgtgaatattcatgttgggaagtgttgtt |
355 |
Q |
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| T |
11670188 |
tagg-ttaagaggttgatatctttgtgaaaattcatgttgagaagtgttgtt |
11670138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 11675887 - 11676015
Alignment:
| Q |
210 |
gaattttgtaatttttcattgtttctctgatcatgagttgatg----tgg-tgtagatttaa-tataggaatttgttgttgaggcaattagtttggtttt |
303 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||| ||||| ||| ||||||||| | || | ||||||| |||||||||||||||||||||||| |
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| T |
11675887 |
gaattttgtaatttttcattgtttatgtgatcatgaggtgatggtggtggatgtagattttagtagatgaatttgatgttgaggcaattagtttggtttt |
11675986 |
T |
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| Q |
304 |
ttgggttaataggttgatatctttgtgaa |
332 |
Q |
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|| | |||| ||||||||||||||||||| |
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| T |
11675987 |
ttagattaagaggttgatatctttgtgaa |
11676015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 11667316 - 11667255
Alignment:
| Q |
25 |
gtgatttgaattattttttagttttgaattctagattgtgattgtggagattgtgaaaacgtg |
87 |
Q |
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| T |
11667316 |
gtgatttgaattgttttt-agttttgaattctggattgtgattttggagatggtgaaaacgtg |
11667255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 11670471 - 11670410
Alignment:
| Q |
25 |
gtgatttgaattattttttagttttgaattctagattgtgattgtggagattgtgaaaacgtg |
87 |
Q |
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| T |
11670471 |
gtgatttgaattgttttt-agttttgaattctggattgtgattttggagatggtgaaaacgtg |
11670410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 11675704 - 11675765
Alignment:
| Q |
25 |
gtgatttgaattattttttagttttgaattctagattgtgattgtggagattgtgaaaacgtg |
87 |
Q |
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| T |
11675704 |
gtgatttgaattgtttt-tagttttgaattctggattgtgattttggagatggtgaaaacgtg |
11675765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 400
Target Start/End: Complemental strand, 8284468 - 8284438
Alignment:
| Q |
370 |
gaaaaaagtggtttgttcaaattatgctata |
400 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8284468 |
gaaaaaagtggtttgttcaaattatgctata |
8284438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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