View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_20 (Length: 272)
Name: NF16756_low_20
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 38274824 - 38275018
Alignment:
| Q |
16 |
attattataaggtacaaacagaaacctagcatgatacggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagt |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38274824 |
attattataaggtacaaacagaaacctagcaagatacggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagt |
38274923 |
T |
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| Q |
116 |
aataatctgaatcaagtgtatctaatattctcgtcacatctcattttgtatacaactagaacaaattacttgcttaaatgataagctaaactaga |
210 |
Q |
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| T |
38274924 |
aataatccgaatcgagtgtatctaatattctcgtcacatcacattttgtatacaactagaacaaatcaccttcttaaatgataagctaaactaga |
38275018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 5333150 - 5333021
Alignment:
| Q |
16 |
attattataaggtacaaacagaaacctagcatgatacggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333150 |
attattataaggtacaaacagaaacctagcatgatacggttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagt |
5333051 |
T |
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| Q |
116 |
aataatctgaatcaagtgtatctaatattc |
145 |
Q |
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| T |
5333050 |
aataatctgaatcgagtgtatctaaaattc |
5333021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 29518943 - 29519035
Alignment:
| Q |
53 |
ggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcaagtgtatctaatattc |
145 |
Q |
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| T |
29518943 |
ggttcaaataaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagtaataatctgaatcgagtgtatctaaaattc |
29519035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 35487253 - 35487356
Alignment:
| Q |
16 |
attattataaggtacaaacagaaacctagcatgatacggttcaaacaaattaacacctgaaccgaaaactcaatttctcaattgaatcaatctcataagt |
115 |
Q |
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|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || |
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| T |
35487253 |
attattataaggtaaaaacagaaacctagcatgataccgttcaaacaaattaacacctgaactgaaaactcaatttctcaatcgaatcaatctcatatgt |
35487352 |
T |
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| Q |
116 |
aata |
119 |
Q |
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|||| |
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| T |
35487353 |
aata |
35487356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 35487352 - 35487397
Alignment:
| Q |
138 |
taatattctcgtcacatctcattttgtatacaactagaacaaatta |
183 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35487352 |
taatattctcgtcatatctcattttgtatacaactagaacaaatta |
35487397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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