View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16756_low_25 (Length: 240)

Name: NF16756_low_25
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16756_low_25
NF16756_low_25
[»] chr1 (8 HSPs)
chr1 (18-225)||(4160177-4160384)
chr1 (19-113)||(12804631-12804725)
chr1 (19-113)||(12774849-12774943)
chr1 (46-221)||(31644205-31644380)
chr1 (41-113)||(50788961-50789033)
chr1 (18-98)||(28496225-28496305)
chr1 (19-119)||(36989246-36989346)
chr1 (156-224)||(42286921-42286989)
[»] chr2 (2 HSPs)
chr2 (18-225)||(42898101-42898305)
chr2 (18-134)||(38895976-38896092)
[»] chr4 (1 HSPs)
chr4 (38-224)||(30518287-30518470)
[»] chr8 (2 HSPs)
chr8 (18-225)||(5788842-5789046)
chr8 (163-225)||(33186538-33186600)
[»] chr7 (1 HSPs)
chr7 (150-225)||(40749193-40749268)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 4160384 - 4160177
Alignment:
Q  18 cttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160384 cttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaaca 4160285  T
Q  118 tatactttctttcttatgatttcattgacgtttcttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160284 tatactttctttcttatgatttcattgacgtttcttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaa 4160185  T
Q  218 aacctttg 225  Q
    ||||||||    
T  4160184 aacctttg 4160177  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 12804631 - 12804725
Alignment:
Q  19 ttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggaca 113  Q
    |||||||| ||||| ||  ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  12804631 ttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggttctggaca 12804725  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 12774943 - 12774849
Alignment:
Q  19 ttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggaca 113  Q
    |||||||| ||||| || ||| |||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  12774943 ttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggttctggaca 12774849  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 221
Target Start/End: Original strand, 31644205 - 31644380
Alignment:
Q  46 ttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaacatatactttctttcttatgatttcattga 145  Q
    ||||| ||||| || || || ||||| ||||||||||||| ||| ||||||||||  |||||||||||||||||  || ||||| | || |  || |||     
T  31644205 ttcttaattcctgtaagatctccaagagcccttgaagggttatgatgaacacatgaaggctctggacaaacataagctctctttttaataacatctttgt 31644304  T
Q  146 cgtttcttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaacc 221  Q
     ||| |||| ||| | ||||||||| |  |||||||||||| |||| ||||| || ||||||||||||||||||||    
T  31644305 tgttcctttgcttcaacttccatggtaggttatgtcctctcctatgtagctgtaggttttgatctctttgaaaacc 31644380  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 50788961 - 50789033
Alignment:
Q  41 agtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggaca 113  Q
    |||| ||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||    
T  50788961 agtgtttcttaatcccagtgaggtcaccaagtgcccttgaagggtcatgatgaacgcatgtgggctcaggaca 50789033  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 28496225 - 28496305
Alignment:
Q  18 cttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacaca 98  Q
    ||||||||||||||| ||   ||||||||| || || || || |||||||||||||| ||||||||||||||||| |||||    
T  28496225 cttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 28496305  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 36989346 - 36989246
Alignment:
Q  19 ttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaacat 118  Q
    |||||||| ||||| ||  |||||||||| || |||||||| || ||||||||||| |||| ||||| |||||| |||||||  || || ||||||||||    
T  36989346 ttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaaggttcaggacaaacat 36989247  T
Q  119 a 119  Q
    |    
T  36989246 a 36989246  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 42286989 - 42286921
Alignment:
Q  156 ctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaaccttt 224  Q
    |||||||||||| || | ||| ||||||||  ||||||| ||||||||||| || |||||||| |||||    
T  42286989 ctttagcttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttgaaacccttt 42286921  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 42898305 - 42898101
Alignment:
Q  18 cttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaaca 117  Q
    ||||||||||||||| ||| | |||||||||||||| ||||||||||| || |  || ||||| ||||||||||| ||||| ||||| |||||||| |||    
T  42898305 cttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggacacaca 42898206  T
Q  118 tatactttctttcttatgatttcattgacgtttcttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaa 217  Q
    || |||||||| |||   || ||||||    |||||| ||| | ||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||    
T  42898205 taaactttcttcctt---atctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttgaa 42898109  T
Q  218 aacctttg 225  Q
    | ||||||    
T  42898108 atcctttg 42898101  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 38895976 - 38896092
Alignment:
Q  18 cttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaaca 117  Q
    |||||||||||| |||||  ||||||||||||| || |||||||  || || |  ||||||||||| | ||  |||||||||||   ||||||||| |||    
T  38895976 cttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggatgattatgaacacatgtcttctctggacacaca 38896075  T
Q  118 tatactttctttcttat 134  Q
    || ||| |||| |||||    
T  38896076 tacactctcttccttat 38896092  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 30518287 - 30518470
Alignment:
Q  38 aaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaacatatactttctttcttatgat 137  Q
    |||||||||| || || ||||||| ||||||||||||||||||||| |||||||| ||||| |||  ||||||||| ||||| ||| ||||  ||   ||    
T  30518287 aaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacacaagttttctctggacacacataaactctcttcttt---at 30518383  T
Q  138 ttcattgacgtttcttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaaccttt 224  Q
    ||| |||    |||| | ||| ||||||||||| | ||||||||| |   |||| || |||||||||||||||||||||||||||||    
T  30518384 ttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagattttgatctctttgaaaaccttt 30518470  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 5788842 - 5789046
Alignment:
Q  18 cttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaaca 117  Q
    ||||||||| ||||| ||| ||||||| |||||||||||||| |  || || | ||| ||||| || ||||| || ||||| ||||| |||||||| |||    
T  5788842 cttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatgatgcacacaagttggttctggacataca 5788941  T
Q  118 tatactttctttcttat-gatttcattgacgtttcttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttga 216  Q
    |||||||||||||| ||   |||  |||    ||||||  || | ||||||||| |||||||| |||||  | ||||| |||||||||||||||||||||    
T  5788942 tatactttctttctaatctctttacttg----ttctttgtttcaacttccatggtaaattatgacctcttctgtgaagttgaagattttgatctctttga 5789037  T
Q  217 aaacctttg 225  Q
    || ||||||    
T  5789038 aaccctttg 5789046  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 33186600 - 33186538
Alignment:
Q  163 ttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaacctttg 225  Q
    |||||||| | ||||||||||||  |||| || |||||||| |||||||||||||| ||||||    
T  33186600 ttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttg 33186538  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 40749268 - 40749193
Alignment:
Q  150 tcttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaacctttg 225  Q
    ||||| ||||||||||||||| |  || || |||||  |||||||||||||||| ||||||||||| || ||||||    
T  40749268 tctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttggaatcctttg 40749193  T

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