View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_3 (Length: 437)
Name: NF16756_low_3
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Complemental strand, 33990400 - 33990000
Alignment:
| Q |
9 |
gcagcaggtgctctacaatcataaaacacagtaaacaacagttaggagggtgcagataccaaaattggttcaaccacagttctcaaaaatgtcaactgtt |
108 |
Q |
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| T |
33990400 |
gcagcaggtgctctacaatcataaaacatagtaaacaacagttaggagggtgcagataccaaaattggttcaaccacagttctcaaaaatgtcaactgtt |
33990301 |
T |
|
| Q |
109 |
tttatataatctgcaagatgaaatatttgcacacnnnnnnngatcatagatagagctaggaaaatgtgaagtatatataataccttttgcatgtttggta |
208 |
Q |
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| T |
33990300 |
tttgtataatctgcaagatgaaatatttgcacacaaaaaaagatcatagatagagctaggaaaatgtgaagtatatataataccttttgcatgtttggta |
33990201 |
T |
|
| Q |
209 |
ggagcaatagctggggatgagtatgtaagaattgcattcaactgcgccatattagtttttgctgtatattttcagtcactcactcaccacctttttatta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990200 |
ggagcaatagctggggatgagtatgtaagaattgcattcaactgcgccatattagtttttgctgtatattttcagtcactcactcaccacctttttatta |
33990101 |
T |
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| Q |
309 |
tggttgtttggaccctcttgagatgctactgtttctcttctcgtgcatactgtttcagtttctgtttctgtttctgtcaggttataataattatgtaatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33990100 |
tggttgtttggaccctcttgagatgctactgtttctcttctcgtgcatactg------------tttctgtttctgtcaggttataataattatgtaatg |
33990013 |
T |
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| Q |
409 |
caactgtcctttt |
421 |
Q |
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||||||||||||| |
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| T |
33990012 |
caactgtcctttt |
33990000 |
T |
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