View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_30 (Length: 212)
Name: NF16756_low_30
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 31527619 - 31527439
Alignment:
| Q |
13 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527619 |
agatgaaaggtgaagttggctcaaaatctagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
31527520 |
T |
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| Q |
113 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctga |
193 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527519 |
tggagagagtgacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctga |
31527439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 32592312 - 32592492
Alignment:
| Q |
13 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
112 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32592312 |
agatgaaaggtgaagttggctcaaaatctagggaaggacaaacactgcagaatgcagcaaaaattaacgcggagacgaaaattattgctatgcagagggc |
32592411 |
T |
|
| Q |
113 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctga |
193 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32592412 |
tggagagagtgacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctga |
32592492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 51825024 - 51824851
Alignment:
| Q |
11 |
tgagatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagg |
110 |
Q |
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||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
51825024 |
tgagatgaaaggtgaagttggttcgaaatctagggaaggacaaacactgcagaatgcagcaaaaattgacgcagagacgaaagttattgcgatgcagagg |
51824925 |
T |
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| Q |
111 |
gctggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctga |
184 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51824924 |
gctggagagagtaacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctga |
51824851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 37031012 - 37030834
Alignment:
| Q |
13 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
112 |
Q |
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|||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||| |||||||| || |
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| T |
37031012 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcgaaaattgatgcagagacgaaggttattgcaatgcagagagc |
37030913 |
T |
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| Q |
113 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
191 |
Q |
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||||||| |||| ||||||||| | | ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37030912 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaagtttttgagaatcaaagagaggctgaagtggct |
37030834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 49188501 - 49188323
Alignment:
| Q |
13 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
112 |
Q |
| |
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|||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||| |||||||| || |
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| T |
49188501 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
49188402 |
T |
|
| Q |
113 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
191 |
Q |
| |
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||||||| |||| ||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49188401 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
49188323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 49192237 - 49192057
Alignment:
| Q |
13 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
112 |
Q |
| |
|
||||||||||||| |||| || |||| ||||||||||||||||| || ||||||||||||||||| || ||||| || |||||||| ||||||||||| |
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| T |
49192237 |
agatgaaaggtgagattggttcgaaattgagggaaggacaaacactacaaaatgcagcaaaaattgatgcagagacaaagattattgcgatgcagagggc |
49192138 |
T |
|
| Q |
113 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctga |
193 |
Q |
| |
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||||||| | |||||||||||| | | ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
49192137 |
tggagagggcgacaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcagagagaagctgaagtggctga |
49192057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 49208514 - 49208334
Alignment:
| Q |
13 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
112 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| | ||||| ||||| |||||||| || |||||||| ||||||| ||||||||||| |
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| T |
49208514 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgatccagaacgcagcgaaaattgatgcagagacgaaggttattgcgatgcagagggc |
49208415 |
T |
|
| Q |
113 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctga |
193 |
Q |
| |
|
|||||| |||| || ||||| | | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49208414 |
tggagaaggtgagaaacagggaattaaagtgaggactgaagtgaaagtttttgagaatcaaagagaggctgaagtggctga |
49208334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 49213354 - 49213174
Alignment:
| Q |
13 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
112 |
Q |
| |
|
|||||||||||||| |||| || |||| |||| ||||||||| ||||||||||||||||||||||| || |||||||| |||| || ||||| ||||| |
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| T |
49213354 |
agatgaaaggtgaaattggttcgaaattgagggtaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttatagcgatgcaaagggc |
49213255 |
T |
|
| Q |
113 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctga |
193 |
Q |
| |
|
||||| ||||| ||| ||||| | | ||| || ||||||||||| || ||||||||||| |||||||||||||||||||| |
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| T |
49213254 |
aggagaaagtgagaagcagggaattaaagtgagaactgaagtgaaagtatttgagaatcagagagaggctgaagtggctga |
49213174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 49203310 - 49203163
Alignment:
| Q |
46 |
aaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggctggagagagtgacaaggagggattaagagttag |
145 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| || ||||| ||| ||||||| |||||||| | ||| || |||||||||||||| | | ||| || |
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| T |
49203310 |
aaggaaaaacgctgcagaatgcagcgaagattgatgcagagacaaaagttattgcactgcagaggaccggatagggtgacaaggagggaattaaagtgag |
49203211 |
T |
|
| Q |
146 |
gactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctga |
193 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
49203210 |
gactgaagtgaaggtttttgagaatcagagagaggctgaggtggctga |
49203163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 26756880 - 26756703
Alignment:
| Q |
13 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
112 |
Q |
| |
|
||||||||||||||||||| || |||| ||| |||||||||| |||||||||||||| |||||||| || ||||||||| | ||||| | ||||||||| |
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| T |
26756880 |
agatgaaaggtgaagttggatcgaaatcgaggaaaggacaaacgctgcagaatgcagcgaaaattgatgcagagacgaaagtcattgcgacgcagagggc |
26756781 |
T |
|
| Q |
113 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggc |
190 |
Q |
| |
|
||||||| ||| ||||| | | | | ||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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|
| T |
26756780 |
tggagaggctgagaaggaagaaattaaagttaggactgaagtgaaggtttttgagaataagagagaggctgaggtggc |
26756703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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