View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_4 (Length: 431)
Name: NF16756_low_4
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 73 - 425
Target Start/End: Complemental strand, 12572167 - 12571814
Alignment:
| Q |
73 |
gttataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtatattttgttgcagttttttaggctggatattttttgcatagt |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12572167 |
gttataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtatattttgttgcagttttttaggctggatattttttgcatagt |
12572068 |
T |
|
| Q |
173 |
tagttatattagcaataggttctttgtagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttata |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12572067 |
tagttatattagcaataggttctttgtagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttata |
12571968 |
T |
|
| Q |
273 |
tgttcatggttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctactcttgttta |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12571967 |
tgttcatggttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctactcttgttta |
12571868 |
T |
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| Q |
373 |
ggaattagagaa-tttcttggtggtacattacatcggcactttattcatttcag |
425 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12571867 |
ggaattagagaattttcttggtggtacattacatcggcactttattcatttcag |
12571814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 73 - 425
Target Start/End: Complemental strand, 13548631 - 13548278
Alignment:
| Q |
73 |
gttataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtatattttgttgcagttttttaggctggatattttttgcatagt |
172 |
Q |
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| T |
13548631 |
gttataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtatattttgttgcagttttttaggctggatattttttgcatagt |
13548532 |
T |
|
| Q |
173 |
tagttatattagcaataggttctttgtagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttata |
272 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13548531 |
tagttatattagcaataggttctttgtagacaagcttttggtattttaaattcaatgtgtctttaaaaattgaactcttaacaaatgatatatctttata |
13548432 |
T |
|
| Q |
273 |
tgttcatggttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctactcttgttta |
372 |
Q |
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| T |
13548431 |
tgttcatggttagttacctttctttttaaaacttttgatatgtttattctctttgttatgagtacaagagataacattaagagagtcctactcttgttta |
13548332 |
T |
|
| Q |
373 |
ggaattagagaa-tttcttggtggtacattacatcggcactttattcatttcag |
425 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13548331 |
ggaattagagaattttcttggtggtacattacatcggcactttattcatttcag |
13548278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 130 - 425
Target Start/End: Original strand, 4293384 - 4293680
Alignment:
| Q |
130 |
atattttgttgcagttttttaggctggatattttttgcatagttagttatattagcaataggttctttgtagacaagcttttggtattttaaattcaatg |
229 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4293384 |
atattttgttgcagttttttaggttggatattttttgcatagttagttatattagcaataggttctttgcagacaagcttttggtattttaaattcaatg |
4293483 |
T |
|
| Q |
230 |
tgtctttaaaaattgaactcttaacaaatgatatatctttatatgttcatggttagttacctttctttttaaaacttttgatatgtttattctctttgtt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4293484 |
tgtctttaaaaattgaactcttaacaaatgatatatctttatatgttcatggttagttacctttctttttaaaacttttgatatgtttattctctttgtt |
4293583 |
T |
|
| Q |
330 |
atgagtacaagagataacattaagagagtcctactcttgtttaggaattagagaa-tttcttggtggtacattacatcggcactttattcatttcag |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
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| T |
4293584 |
atgagtacaagagataacattaagagagtcctactcttatttaggaattagagaattttcttggtggtacattacatcggtacttttttcatttcag |
4293680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 770842 - 770906
Alignment:
| Q |
76 |
ataatttataggttggcacagtgtttgtagctatcctaaggttcaattttgagtatattttgttg |
140 |
Q |
| |
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|||||||||||| ||| ||| |||||||||| || ||||||||||||||| |||| |||||||| |
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| T |
770842 |
ataatttataggctggtacaatgtttgtagccataataaggttcaattttgtgtatgttttgttg |
770906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 51389180 - 51389096
Alignment:
| Q |
188 |
taggttctttgtagacaagcttttggtattttaaa-ttcaatgtgtctttaaaaa-ttgaactcttaacaaatgatatatcttta |
270 |
Q |
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||||||||||| | ||||| ||||||||||||||| | | |||| |||||||||| ||||| |||||||||| ||||||||||| |
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| T |
51389180 |
taggttctttgcatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaataatatatcttta |
51389096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 4351933 - 4351975
Alignment:
| Q |
73 |
gttataatttataggttggcacagtgtttgtagctatcctaag |
115 |
Q |
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||||||| ||||||||||||||| ||||||||||||| ||||| |
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| T |
4351933 |
gttataagttataggttggcacaatgtttgtagctatactaag |
4351975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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