View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16756_low_5 (Length: 427)

Name: NF16756_low_5
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16756_low_5
NF16756_low_5
[»] chr4 (3 HSPs)
chr4 (85-412)||(44185269-44185582)
chr4 (136-406)||(4875859-4876145)
chr4 (183-406)||(1326315-1326553)
[»] chr3 (1 HSPs)
chr3 (163-406)||(5387479-5387737)
[»] scaffold0831 (2 HSPs)
scaffold0831 (317-405)||(2047-2135)
scaffold0831 (256-320)||(2146-2211)
[»] chr8 (4 HSPs)
chr8 (329-406)||(26531587-26531664)
chr8 (271-322)||(27183114-27183166)
chr8 (271-322)||(27231119-27231171)
chr8 (266-320)||(26531509-26531564)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 85 - 412
Target Start/End: Original strand, 44185269 - 44185582
Alignment:
Q  85 ttagtgtggagtattttaaaggaagttaaaagctcccaccgttccgtttggtttgcattgc----acagtcacaaagaaatcgcttcacgttccagaaag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||    
T  44185269 ttagtgtggagtattttaaaggaagttaaaagctcccaccgttccgtttggtttgcattgcgcacacagtcacaaagaaatcgcttcacgttcgagaaag 44185368  T
Q  181 aaatccatggctacaaaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctca 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  44185369 aaatccatggctacaaaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaa------- 44185461  T
Q  281 atcgatttacttgtgctccaaatcatggtctcttttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacaccta 380  Q
               ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44185462 -----------tgtgctccaaatcatggtctcttttatttcatgcaattgttccacaccaatttcatatctatgcatcgctcattgtacaatcacaccta 44185550  T
Q  381 tctcttcctaaatattaaggagatatcaccac 412  Q
    ||||||||||||||||||||||||||| ||||    
T  44185551 tctcttcctaaatattaaggagatatcgccac 44185582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 136 - 406
Target Start/End: Original strand, 4875859 - 4876145
Alignment:
Q  136 tttgcattgcacagt-cacaaagaaatcgcttcacgttccagaaagaaatccatggctacaaaaagtgacaaggttagtaaccgtagctatattcctgat 234  Q
    |||| |||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4875859 tttgtattgcacagttcacagagaaatggcttcacgttcgagaaagaaatccatggctacaaaaagtgacaaggttagtaaccgtagctatattcccgat 4875958  T
Q  235 gaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtg-ctccaaatcatggtctctttt--------------att 319  Q
    || ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||| |||||||||              |||    
T  4875959 gacatttccttttctattctttccaaattacccctccaatctctcaattgatttacatgtgcctccaaatcatcgtctcttttatttcaaaaccctaatt 4876058  T
Q  320 tcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatat 406  Q
    ||||| |  ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||    
T  4876059 tcatgaacatgttccgcaccaatttcatatctatgcatcgatcattgtacgatcacacttatctctttctaaatattaaggagatat 4876145  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 183 - 406
Target Start/End: Original strand, 1326315 - 1326553
Alignment:
Q  183 atccatggctacaaaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaat 282  Q
    |||||||||||||||||||||||||||||| |||  |||||||||| ||||||| ||||| || |||||||||||||||||||| ||||||||||||||     
T  1326315 atccatggctacaaaaagtgacaaggttagcaacactagctatattgctgatgacatttccttctctattctttccaaattacctctcaaatctctcaaa 1326414  T
Q  283 cgatttacttgtgc-tccaaatcatggtctctt--------------ttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgt 367  Q
    |||||||| ||||| | |||| ||| |||||||              |||||||||||   |||| |||||||||||||||||||||||| | ||| |||    
T  1326415 cgatttacgtgtgcatgcaaaccatagtctcttttatttcaaaacccttatttcatgcctatgtttcgcaccaatttcatatctatgcattgttcactgt 1326514  T
Q  368 acaatcacacctatctcttcctaaatattaaggagatat 406  Q
    ||||| |||| ||||||||||| ||||| ||||||||||    
T  1326515 acaatgacacatatctcttccttaatataaaggagatat 1326553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 163 - 406
Target Start/End: Original strand, 5387479 - 5387737
Alignment:
Q  163 gcttcacgttccagaaagaaatccatggctacaaaaagtgacaaggttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaat 262  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| | ||||| ||||| |||||||||||||||||||    
T  5387479 gcttcaccttcgagaaagaaatcaatggctacaaaaagtgacaaggttagtaacagtaactatatttccgatgacatttccttttctattctttccaaat 5387578  T
Q  263 tacccctcaaatctctcaatcgatttacttgtg-ctccaaatcatggtctctttt--------------atttcatgcaattgttccgcaccaatttcat 347  Q
    |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||              |||||||||||||||||||||||||||||||    
T  5387579 tacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcat 5387678  T
Q  348 atctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatat 406  Q
    || ||||||||||||||||||  ||||||||| |||| ||||| |||| ||||||||||    
T  5387679 atttatgcatcgctcattgtatgatcacacctttctcatcctatatataaaggagatat 5387737  T

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Target: scaffold0831 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 2135 - 2047
Alignment:
Q  317 atttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagata 405  Q
    |||||||| || |||| |||| ||||||||||| ||||||||| |||||||||||| |||| | ||| ||||||||||| |||||||||    
T  2135 atttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatgacacatgtcttttcctaaatataaaggagata 2047  T

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Target: scaffold0831; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 2211 - 2146
Alignment:
Q  256 tccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt 320  Q
    |||||| |||| || ||||||||||| |||||||||||||| | ||| ||||||||||||||||||    
T  2211 tccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttattt 2146  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 406
Target Start/End: Original strand, 26531587 - 26531664
Alignment:
Q  329 tgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatat 406  Q
    |||||||||  |||||||||||||||||||  |||||||||||  |||| |||||||| |||||||| ||||||||||    
T  26531587 tgttccgcaaaaatttcatatctatgcatcagtcattgtacaacaacacttatctctttctaaatataaaggagatat 26531664  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 27183114 - 27183166
Alignment:
Q  271 aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca 322  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  27183114 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca 27183166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 27231171 - 27231119
Alignment:
Q  271 aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca 322  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  27231171 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca 27231119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 26531509 - 26531564
Alignment:
Q  266 ccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt 320  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||||||||||||    
T  26531509 ccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttattt 26531564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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