View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16756_low_6 (Length: 419)
Name: NF16756_low_6
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 37079428 - 37079793
Alignment:
| Q |
16 |
agtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37079428 |
agtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaa |
37079527 |
T |
|
| Q |
116 |
gtcaccaattcaggtattccaagttttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacatgga |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37079528 |
gtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacatgga |
37079627 |
T |
|
| Q |
216 |
acattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaaccaatgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37079628 |
acattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaaccaatgt |
37079727 |
T |
|
| Q |
316 |
gagtgtctctactctatctctaaattgtttgtcggagcctgtcagaaagaaatatcgttgatcagt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
37079728 |
gagtgtctctactctatctctaaattgtttgtcggagcctgtcagaaagaaatatcgtcgatcagt |
37079793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 37069668 - 37070040
Alignment:
| Q |
16 |
agtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||||||||||| || | ||||||| ||||||||||||||| ||| |||||||| |||||| |
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|
| T |
37069668 |
agtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttcagtgagaaa |
37069767 |
T |
|
| Q |
116 |
gtcaccaattcaggtattccaagttttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacatgga |
215 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |
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|
| T |
37069768 |
gtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaaagcttgga |
37069867 |
T |
|
| Q |
216 |
acattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaaccaatgt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
37069868 |
acattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagtgttgaaaccaatgt |
37069967 |
T |
|
| Q |
316 |
gagtgtctctactctatctctaaattgtttgtcggagcctgtcagaaagaaatatcgttgatcagtgttgttg |
388 |
Q |
| |
|
|||||||||||| || |||||| |||| |||| ||||||||||| ||||||||||||| | |||||| ||||| |
|
|
| T |
37069968 |
gagtgtctctaccctgtctctatattgcttgttggagcctgtcaaaaagaaatatcgtggttcagtggtgttg |
37070040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 36948291 - 36947980
Alignment:
| Q |
16 |
agtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
36948291 |
agtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaagaattggcataacaattttcagagagaat |
36948192 |
T |
|
| Q |
116 |
gtcaccaattcaggtattccaagttttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacatgga |
215 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| | || | |
|
|
| T |
36948191 |
ttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaataatgatattgtgatgaagataatgaatgcttgaa |
36948092 |
T |
|
| Q |
216 |
acattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaaccaatgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
36948091 |
acattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgcagtgattataagggttgaaaccaatat |
36947992 |
T |
|
| Q |
316 |
gagtgtctctac |
327 |
Q |
| |
|
||||||||||| |
|
|
| T |
36947991 |
cagtgtctctac |
36947980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 36956365 - 36956065
Alignment:
| Q |
18 |
taagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaagt |
117 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| || ||||| ||||||| ||| | |||||||||||||||||| |||| |||||||| |||| ||||| |
|
|
| T |
36956365 |
taagttcactaataacagtgtacagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagaagcggcacaacaattttgagagtaaaagt |
36956266 |
T |
|
| Q |
118 |
caccaattcaggtattccaagttttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacatggaac |
217 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36956265 |
taccaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaattgaactgaacaatgatattgtgatgaagataatgaaaacatggaac |
36956166 |
T |
|
| Q |
218 |
attgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaaccaatgtga |
317 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||| | ||||| |
|
|
| T |
36956165 |
attgcatgacatagattgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctactgatgctgtgattataagtgttgaaacaattgtga |
36956066 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
36956065 |
g |
36956065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 36935509 - 36935220
Alignment:
| Q |
20 |
agttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaagtca |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| || | ||||||||||||||||| ||||| || ||||| |||| ||||||| |
|
|
| T |
36935509 |
agttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagaggtaaagtca |
36935410 |
T |
|
| Q |
120 |
ccaattcaggtattccaagttttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacatggaacat |
219 |
Q |
| |
|
|||||||| || |||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||| |
|
|
| T |
36935409 |
gcaattcagttaacccaaatgttgcccaaaagagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacat |
36935310 |
T |
|
| Q |
220 |
tgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaac |
309 |
Q |
| |
|
|| ||||||||| |||| ||||||||| || ||||||| |||||| || |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36935309 |
tgtatgacatagattgtgtgcttttccttctgcttcacatggaacggctaaacatgctgctactgaagcagtgattataagtgttgaaac |
36935220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 36971718 - 36971650
Alignment:
| Q |
259 |
tggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaaccaatgtgagtgtctctac |
327 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
36971718 |
tggaacaccaaaacatgctgctactgatgcagtgattataagtgttgaaaccaatatcagtgtctctac |
36971650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 12493457 - 12493750
Alignment:
| Q |
16 |
agtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattttcagagagaaa |
115 |
Q |
| |
|
|||||||||||| ||||||||||| || | |||||| ||||||||||||| || | |||||||||||||||||| ||||| || ||||| |||| ||| |
|
|
| T |
12493457 |
agtaagttcactaataacagtgtaaagactagccatgaaagccaaagataacgaaatgagagcgattccaagaagcggcatgaccattttgagagtaaaa |
12493556 |
T |
|
| Q |
116 |
gtcaccaattcaggtattccaagttttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataatgaaaacatgga |
215 |
Q |
| |
|
|| |||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
12493557 |
gttaccaattcagttaacccaagtgttgcccaaaagagtatgatagtagcactaatggaactgaacaacgatattgtgatgaagataatgaaagcatgga |
12493656 |
T |
|
| Q |
216 |
acattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagggttgaaac |
309 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12493657 |
acattgcatgacataggctgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctactgaagcagtgattataagtgttgaaac |
12493750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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