View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_7 (Length: 394)
Name: NF16756_low_7
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_7 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 111088 - 111454
Alignment:
| Q |
1 |
aacttatttttccctcctaaggagaatatcttcaaattcaaaaaaccagcatccaagatagtttgttgtagcactagaacaaaaagaccatttcaaattc |
100 |
Q |
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| T |
111088 |
aacttatttttccctcctaaggagattatcttcaaattcaaaaaaccagcatccaagatagtttgttgtagcactagaacaaaaagaccatttcaaattc |
111187 |
T |
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| Q |
101 |
tagctgtcaaagctctagaacaccaagctatatcctcatgtaaaggcaaatacttgaaacataccgtctccgttccttgtgacttttccatacataagtc |
200 |
Q |
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| T |
111188 |
tagctgtcaaagctctagaacaccaagctatatcctcatgtaaaggcaaatacttgaaacataccgtctccgttccttgtgacttttccatacataagtc |
111287 |
T |
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| Q |
201 |
ctcccccatgaacttcgctccgacctccacttcaaccttatctccattcaccacacccatccctcccctctcctttgcctccctcaccttttcccattcc |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111288 |
ctcccccataaacttcgctccgacctccacttcaaccttatccccattcaccacacccatccctcccctctcctttgcctccctcaccttttcccattcc |
111387 |
T |
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| Q |
301 |
tcgtcactccttaatgcttcctccttcaccctctccaatacatgttttcctttaaaataccatctcc |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111388 |
tcgtcactccttaatgcttcctccttcaccctctccaatacatgttttcctttaaaataccatctcc |
111454 |
T |
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