View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_8 (Length: 381)
Name: NF16756_low_8
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 17658838 - 17658619
Alignment:
| Q |
9 |
gagcagaacctgtgaaggctattggatccggtgtacataattccgatctccaaccttttttgtgtatcgtcaacccagttagtatatcttctgtcattgt |
108 |
Q |
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| T |
17658838 |
gagcacaacctgtgaaggctattggatccggtgtacataattccgatctccaaccttttttgtgtatcgtcagcccagttagtatatcttcagtcattgt |
17658739 |
T |
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| Q |
109 |
tccatacatccaacccacctaaaattccaataagatcaattcaatttcctgttatag--cnnnnnnnnaaacaaccaaaatttattaaccgctacatctg |
206 |
Q |
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| T |
17658738 |
tccatacatccaacccacctaaaattccaacaagatcaatccaatttcctgttatagttttttttttgaaacaaccaaaatttattaaccgctacatctg |
17658639 |
T |
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| Q |
207 |
cacaagacgcatagagcaag |
226 |
Q |
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| T |
17658638 |
cacaagacgcacagagcaag |
17658619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 17658589 - 17658482
Alignment:
| Q |
256 |
gcgtctatcacgttcatacaagtttgtctgacaaacctgtttaccccaaccagtgccgtattcatatccataagaagcaacatgaatagcttcctcaaca |
355 |
Q |
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| T |
17658589 |
gcgtctatcacgtttgtacaagtttgtatgacaaacctgtttaccccaacccgtgccgtattcatatccataagaagcaacatgaatagcttcctcaaca |
17658490 |
T |
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| Q |
356 |
gctttgtt |
363 |
Q |
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| T |
17658489 |
gctttgtt |
17658482 |
T |
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