View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_low_9 (Length: 379)
Name: NF16756_low_9
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 47874240 - 47874595
Alignment:
| Q |
6 |
aggtagagccatattctcttacgttaggagttggatcagctgctgataatattgatgagagaaatattcatcatcaagtagctactacaacaaagactga |
105 |
Q |
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| T |
47874240 |
aggtagagccatattctcttacgttaggagttggatcagctgctgataatattgatgagagaaatattcatcatcaagtagctactacaacaaagactga |
47874339 |
T |
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| Q |
106 |
atcggatgagtttatttataatttgcatcaacgtgcctctaattctactagcgtgatgtcttcattttccaactcctctaatagcatcaagagggagaga |
205 |
Q |
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| T |
47874340 |
atcggatgattttatttataatttgcatcaacgtgcctctaattctactagcgtgatgtcttcattttccaactcctctaatagcatcaagagggagaga |
47874439 |
T |
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| Q |
206 |
aatgaagtacatgagccagagaagatttcatttgttgatgttgatgatgtaaatgataaccccattaggaagaaacttaggcttaccaaagaacaatctg |
305 |
Q |
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| T |
47874440 |
aatgaagtccatgagccagagaagatttcatttgttgatgttgatgatgtaaatgataaccccattaggaagaaacttaggcttaccaaagaacaatctg |
47874539 |
T |
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| Q |
306 |
cagtcttggaggacaccttcaaagatcattctactctcaatccggtatatatcttc |
361 |
Q |
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| T |
47874540 |
cagtcttggaggacaccttcaaagatcattctactctcaatccggtatatatcttc |
47874595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 4665812 - 4665732
Alignment:
| Q |
272 |
aggaagaaacttaggcttaccaaagaacaatctgcagtcttggaggacaccttcaaagatcattctactctcaatccggta |
352 |
Q |
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| T |
4665812 |
aggaagaaacttaggctcacaaaagaacaatcagaagttttggaggaaaacttcagagagcattctactcttaatccggta |
4665732 |
T |
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