View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_20 (Length: 431)
Name: NF16757_high_20
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 3002505 - 3002687
Alignment:
| Q |
1 |
tcataccaccatgattagagatctcgatacaccgactaagtgacaactctaagagcgtaggatatttctatgatatcaagatcaatacattatcgtcaac |
100 |
Q |
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| T |
3002505 |
tcataccaccatgattagagatctcgatacaccgattaagtgacaactctaagagcgtaggatatttctatgatatcaagaccaatacattatcgtcaac |
3002604 |
T |
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| Q |
101 |
aacaatccttgatatcactaatacaaaaaacacttattagtttaaggatattaaaaaagttgggtgtaaggtaagtttttgact |
184 |
Q |
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| T |
3002605 |
aacaatccttggtatcactaatacaaaaaacacttattagttcaaggatatt-aaaaagttgggtgtaaggtaagtttttgact |
3002687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 220 - 416
Target Start/End: Original strand, 3002685 - 3002882
Alignment:
| Q |
220 |
actatttatcaaaagtaagctaaaatacaaagttccaaaaccaaatgtaaagcgccaaactataatacaaagtgtctctcaccaaaacaattcactcagc |
319 |
Q |
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| T |
3002685 |
actatttattaaaagtaagccaaaatacaaagttccaagaccaaatggaaagcgccaaactaaaatacaaagtgcctcccaccaaaacaattcactcagc |
3002784 |
T |
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| Q |
320 |
aaaagggccaaacacataaaactc-nnnnnnntttcactcaccaaaaatttccctttaccatattcaaatctctctcctccatcgaagcgaggtccat |
416 |
Q |
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| T |
3002785 |
aaaagagccaaacacataaaactcaacaaaaatttcactcaccaaaaattcccctttaccatagccaaatctctctcctccatcgaagcgaggtccat |
3002882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 7653995 - 7653916
Alignment:
| Q |
154 |
aaaaagttgggtgtaaggtaagtttttgacttcaaataatattaaattgtttgaccctatttaaaaactatttatcaaaa |
233 |
Q |
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| T |
7653995 |
aaaaagctgggtgtaaggaaagtttttaacttctaatggtattaaattgttttatcccatttaaaaactatttatcaaaa |
7653916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 20593063 - 20592984
Alignment:
| Q |
154 |
aaaaagttgggtgtaaggtaagtttttgacttcaaataatattaaattgtttgaccctatttaaaaactatttatcaaaa |
233 |
Q |
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| T |
20593063 |
aaaaagctgggtgtaaggaaagtttttaactactaatgatattaaattgtttcaccccatttaaaaactatttatcaaaa |
20592984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 40647206 - 40647127
Alignment:
| Q |
154 |
aaaaagttgggtgtaaggtaagtttttgacttcaaataatattaaattgtttgaccctatttaaaaactatttatcaaaa |
233 |
Q |
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|||||| ||||||||| | || ||||| ||||| ||| |||||||||||||| |||| |||||||||||||||||||||| |
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| T |
40647206 |
aaaaagctgggtgtaatggaaatttttaacttctaatgatattaaattgtttcaccccatttaaaaactatttatcaaaa |
40647127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 22620184 - 22620256
Alignment:
| Q |
161 |
tgggtgtaaggtaagtttttgacttcaaataatattaaattgtttgaccctatttaaaaactatttatcaaaa |
233 |
Q |
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|||||||||| |||||||| ||||| ||| |||||||||||||| | || ||||||||||||||||| |||| |
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| T |
22620184 |
tgggtgtaagaaaagtttttaacttctaatgatattaaattgtttcatcccatttaaaaactatttattaaaa |
22620256 |
T |
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