View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_high_22 (Length: 427)

Name: NF16757_high_22
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_high_22
NF16757_high_22
[»] chr5 (4 HSPs)
chr5 (311-427)||(9511685-9511805)
chr5 (1-107)||(9511376-9511482)
chr5 (325-427)||(11335462-11335562)
chr5 (336-410)||(24136711-24136784)
[»] chr4 (2 HSPs)
chr4 (311-427)||(54147527-54147644)
chr4 (346-404)||(16870562-16870620)
[»] chr7 (4 HSPs)
chr7 (313-427)||(21813729-21813847)
chr7 (313-417)||(6530511-6530619)
chr7 (346-410)||(44338200-44338264)
chr7 (346-404)||(46963921-46963979)
[»] chr2 (3 HSPs)
chr2 (354-410)||(1173675-1173731)
chr2 (346-404)||(8986124-8986182)
chr2 (346-396)||(38584277-38584327)
[»] chr3 (2 HSPs)
chr3 (346-427)||(50295473-50295554)
chr3 (346-406)||(46692123-46692182)
[»] chr8 (2 HSPs)
chr8 (346-410)||(20241877-20241941)
chr8 (346-410)||(20251126-20251190)
[»] chr6 (3 HSPs)
chr6 (359-413)||(10741458-10741512)
chr6 (357-427)||(28063748-28063813)
chr6 (346-410)||(21861964-21862028)
[»] chr1 (1 HSPs)
chr1 (364-412)||(19825175-19825223)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 311 - 427
Target Start/End: Original strand, 9511685 - 9511805
Alignment:
Q  311 catggttcgtgtggttcagttcggtttgatttggatt----tggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttg 406  Q
    |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9511685 catggttcgtgtggttcagttcggtttgatttggattcgcttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttg 9511784  T
Q  407 tttggtgagtcgagtgctcac 427  Q
    |||||||||||||||||||||    
T  9511785 tttggtgagtcgagtgctcac 9511805  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 9511376 - 9511482
Alignment:
Q  1 gttaattggatatctttgtatattgtatgacatatttccggtagctcctcttttattggttgactcctctctatttagtttttgcttctcatttggttgt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  9511376 gttaattggatatctttgtatattttatgacatatttccggtagctcctcttttgttggttgactcctctctatttagttgttgcttctcatttggttgt 9511475  T
Q  101 tcgtctc 107  Q
    |||||||    
T  9511476 tcgtctc 9511482  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 427
Target Start/End: Complemental strand, 11335562 - 11335462
Alignment:
Q  325 ttcagttcggtttgatttggatttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggtgagtcgagtgct 424  Q
    ||||||| | |||||||| | ||||||| |||||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||| | ||| ||||||    
T  11335562 ttcagtttgatttgatttcg-tttggttcaatttgtttggttgtt-ggtgagtcaagatagtgctcacaattggtttgtttgtttggcgggtcaagtgct 11335465  T
Q  425 cac 427  Q
    |||    
T  11335464 cac 11335462  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 24136711 - 24136784
Alignment:
Q  336 ttgatttggatttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 410  Q
    ||||||||| ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| |||||    
T  24136711 ttgatttgg-tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcgtttg 24136784  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 311 - 427
Target Start/End: Original strand, 54147527 - 54147644
Alignment:
Q  311 catggttcgtgtggttcagttcggtttgatttggatt-tggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgttt 409  Q
    |||||||||| |||||||||| |||||||||||||||    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  54147527 catggttcgtttggttcagtttggtttgatttggattcattttgaatttgtttggttgttaggtgagtcaagatagtcctcacaattggtttgtttgttt 54147626  T
Q  410 ggtgagtcgagtgctcac 427  Q
    |||  ||| |||||||||    
T  54147627 ggtaggtcaagtgctcac 54147644  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 404
Target Start/End: Original strand, 16870562 - 16870620
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtt 404  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| |||||||    
T  16870562 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgtt 16870620  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 427
Target Start/End: Original strand, 21813729 - 21813847
Alignment:
Q  313 tggttcgtgtggttcagttcggtttgatttggatttggttg----aatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtt 408  Q
    |||||||| || ||||||||||||||||||||||| |||||    ||||||||||||||||||| |||| |||||| ||||||||||| |||| ||||||    
T  21813729 tggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtt 21813828  T
Q  409 tggtgagtcgagtgctcac 427  Q
    ||||||||| |||||||||    
T  21813829 tggtgagtcaagtgctcac 21813847  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 417
Target Start/End: Original strand, 6530511 - 6530619
Alignment:
Q  313 tggttcgtgtggttcagttcggtttgatttggatttg----gttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtt 408  Q
    |||||| | |||||| |||| |||||||||||||| |    ||| |||||||||| ||||| ||||||| ||||||||  |||||||| |||||| ||||    
T  6530511 tggttcatttggttccgttcagtttgatttggattcgttttgttcaatttgtttgattgttgggtgagtcaagatagtattcacaattggtttgtctgtt 6530610  T
Q  409 tggtgagtc 417  Q
    |||||||||    
T  6530611 tggtgagtc 6530619  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 44338200 - 44338264
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 410  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| |||||    
T  44338200 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttg 44338264  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 404
Target Start/End: Complemental strand, 46963979 - 46963921
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtt 404  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| |||||||    
T  46963979 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgtt 46963921  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 1173731 - 1173675
Alignment:
Q  354 aatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 410  Q
    |||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||    
T  1173731 aatttgtttggttgttaggtgagtcaagatagttctcaaaattggtttgtttgtttg 1173675  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 404
Target Start/End: Original strand, 8986124 - 8986182
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtt 404  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| |||||||    
T  8986124 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgtt 8986182  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 38584327 - 38584277
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaatt 396  Q
    ||||||| |||||||||||||||| ||||||| || ||||| |||||||||    
T  38584327 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaatt 38584277  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 50295473 - 50295554
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggtgagtcgagtgctcac 427  Q
    ||||||| |||||||||||||||| | |||||| ||||||| | ||||||| | |||||||||| ||| ||| |||||||||    
T  50295473 tttggttcaatttgtttggttgttggatgagttgagatagtgcacacaatttgattgtttgtttagtgggtcaagtgctcac 50295554  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 46692182 - 46692123
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttg 406  Q
    |||||||||||| ||||||||||| ||||||||||  |||| ||||||||| | |||||||    
T  46692182 tttggttgaatt-gtttggttgttgggtgagttaatctagttctcacaatttggttgtttg 46692123  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 20241877 - 20241941
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 410  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| |||||    
T  20241877 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttg 20241941  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 20251190 - 20251126
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 410  Q
    ||||||| |||||||||||||||| ||||||| || ||||| ||||||||| ||||||| |||||    
T  20251190 tttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttg 20251126  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 10741458 - 10741512
Alignment:
Q  359 gtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggtg 413  Q
    ||||| ||||| ||||||| ||||||||  |||||||| ||||||||||||||||    
T  10741458 gtttgtttgtttggtgagtcaagatagtgttcacaatttgtttgtttgtttggtg 10741512  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 28063813 - 28063748
Alignment:
Q  357 ttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggtgagtcgagtgctcac 427  Q
    ||||||||||||||||||||||||||| || ||||||     |||| ||||||| |||||||| |||||||    
T  28063813 ttgtttggttgttaggtgagttaagattgtgctcaca-----tttggttgtttgttgagtcgattgctcac 28063748  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 21861964 - 21862028
Alignment:
Q  346 tttggttgaatttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttg 410  Q
    ||||||| ||||| ||||||| ||  |||||| || ||||| ||||||||| |||||||||||||    
T  21861964 tttggttcaatttatttggtttttgagtgagtcaaaatagttctcacaattggtttgtttgtttg 21862028  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 19825223 - 19825175
Alignment:
Q  364 gttgttaggtgagttaagatagtcctcacaattcgtttgtttgtttggt 412  Q
    |||||| ||||||| |||||| | ||||||||| |||||||||||||||    
T  19825223 gttgtttggtgagtcaagataatgctcacaatttgtttgtttgtttggt 19825175  T

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