View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_24 (Length: 421)
Name: NF16757_high_24
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 47894693 - 47894295
Alignment:
| Q |
7 |
gagagaagaatacaaagttaatggaagaaaacaaaacaatgaactgatgaacaaaatcaaatgccacccaatcttcaacaaatccttaatacaagaagaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894693 |
gagacaagaatacaaagttaatggaagaaaacaaaacaatgaactgatgaacaaaatcaaatgccacccaatcttcaacaaatccttaatacaagaagaa |
47894594 |
T |
|
| Q |
107 |
acctaaatgtcaaaaggaattaagaaaacagatacagagacaccaaaaagccatactcctcaacaatgcacagagagctgttttatttctttttgcatca |
206 |
Q |
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| T |
47894593 |
acctaaatgtcaaaaggaattaagaaaacagatatagagacaccaaaatgccatactcctcaacaatgcacagagagctgttttatttctttttgcatca |
47894494 |
T |
|
| Q |
207 |
ttcaactatacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacagggaccgaaacaacaccatc |
306 |
Q |
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| T |
47894493 |
ttcaactatacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacagggaccgaaacaacaccatc |
47894394 |
T |
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| Q |
307 |
gtttgagttcaacctaccaaatttcgcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatagtttgatggaag |
405 |
Q |
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| T |
47894393 |
gtttgagttcaacctaccaaatttctcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatagtttgatggaag |
47894295 |
T |
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