View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_26 (Length: 409)
Name: NF16757_high_26
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 131 - 355
Target Start/End: Complemental strand, 22801222 - 22800997
Alignment:
| Q |
131 |
aaaaaataaactcaacacaagccagttaa-att--ttcaacagttaaatagcaagttaggttgcttcnnnnnnnnnnntagtaagttaggacaaaaagtt |
227 |
Q |
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| T |
22801222 |
aaaaaaaaaactcaacacaaaccagttattattatttcaacagttaaatagcaagttaggttgcttcaaaaaaaaaa-tagtaagttaggacaaaaagtt |
22801124 |
T |
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| Q |
228 |
atcatttgaatgtcaaagaaccacatgaactagattttcttccttctttgaaccaaaaattctctggctgagacatgagaaagaaaatggggattgggta |
327 |
Q |
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| T |
22801123 |
atcatttaaatgtcaaagaaccacatgaactagattttcttccttctttgaaccaaaaatcctctggctgagacatgagagagaaaatggggattgggta |
22801024 |
T |
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| Q |
328 |
tgaaaattactttaagagacatttaata |
355 |
Q |
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| T |
22801023 |
tgaaaattacttt-agagacatttaata |
22800997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 22801341 - 22801272
Alignment:
| Q |
31 |
cccaacaattgcaacgttatttatannnnnnngacgttggctgtattattaacacatatattgtaccatt |
100 |
Q |
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| T |
22801341 |
cccaacaattgcaacgttatttatatttttttgacgttggctttgttattaacacatatattgtaccatt |
22801272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 112 - 326
Target Start/End: Original strand, 4354719 - 4354940
Alignment:
| Q |
112 |
ctcagctttgtaccaaaagaaaaaa-taaactcaacacaagccagttaaattttcaacagttaaatagcaagttaggttgcttcnnnnnnnnnnntagta |
210 |
Q |
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| T |
4354719 |
ctcagctttgtaccaaaagaaaaaaataaactcaacacaagccagttattatttcaaccgttaaatagcaagttaggttgcttcttcaaacaaaaaaaaa |
4354818 |
T |
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| Q |
211 |
a------gttaggacaaaaagttatcatttgaatgtcaaagaaccacatgaactagattttcttccttctttgaaccaaaaattctctggctgagacatg |
304 |
Q |
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| T |
4354819 |
aaaccaagttaggacaaatagttatcatttaaatgtcaaagaaccagatgaactagattttcttccttctttgaaccaaaaatcctctggctgagacagg |
4354918 |
T |
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| Q |
305 |
agaaagaaaatggggattgggt |
326 |
Q |
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||| |||||||||||||||||| |
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| T |
4354919 |
agagagaaaatggggattgggt |
4354940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 4355823 - 4355864
Alignment:
| Q |
352 |
aataataaggtgttgcatgctaatgcacaccttcgtaaaaat |
393 |
Q |
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| T |
4355823 |
aataataaggtgttgcatgctaatatacaccttcataaaaat |
4355864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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