View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_33 (Length: 389)
Name: NF16757_high_33
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_33 |
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| [»] scaffold0016 (3 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 192 - 376
Target Start/End: Original strand, 48099 - 48283
Alignment:
| Q |
192 |
aaggattccatgtagttgatttcatctcaatattatgtttgtcaacggattaacaagcaacagaaatttggaaagaaagtttaacttgattagaaatata |
291 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48099 |
aaggattccatgtagttgatttcatctcaatactatgtttgtcaacggattaacaagcaacagaaatttggaaagaaagtttaacttgattagaaatata |
48198 |
T |
|
| Q |
292 |
acttactaaattaatttgtttctacatttcctattgacaatttagttacaacgttatcattgtcattgtccctatcactgtgatg |
376 |
Q |
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| T |
48199 |
acttactaaattaatttgtttctacatttcctattgacaatttagttacaacgttatcattgtcattgtccctatcactgtgatg |
48283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 44542 - 44710
Alignment:
| Q |
18 |
ggatgaatgttgcttcccatactccgacggtcattcatatgctcctgaaaatatagttcaaatctatgaatatcttaacataatttttcacttaaaaata |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44542 |
ggatgaatgttgcttcccatactccaacggtcattcatatgctcctgaaaatatagttcaaatccatgaatatcttaacataatttttcacttaaaaata |
44641 |
T |
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| Q |
118 |
gaaacactgcaactaaaaatataattaatcatagcctttaatgttcaagatcaagacaatgacgctaaa |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44642 |
gaaacactgcaactaaaaatataattaatcatagcctttaatgttcaagatcaagacaatgacgctaaa |
44710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 78810 - 78943
Alignment:
| Q |
203 |
gtagttgatttcatctcaatattatgtttgtcaacggattaacaagcaacagaaatttggaaagaaagtttaacttgattagaaatataacttactaaat |
302 |
Q |
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||||||||||||||| |||||||| | |||||||| ||||| |||||||||||||||| |||||||||||||||||| ||| |||||| || |
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| T |
78810 |
gtagttgatttcatcccaatattaagcttgtcaacagattat--------agaaatttggaaagaatatttaacttgattagaaatctaa-ttactagat |
78900 |
T |
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| Q |
303 |
taatttgtttctacatttcctattgacaatttagttacaacgt |
345 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
78901 |
taatttgtttctacatttcctattgacaaattagttaaaacgt |
78943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 27259720 - 27259888
Alignment:
| Q |
18 |
ggatgaatgttgcttcccatactccgacggtcattcatatgctcctgaaaatatagttcaaatctatgaatatcttaacataatttttcacttaaaaata |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
27259720 |
ggatgaatgttgcttcccatactccgacagtcattcatatgctcctgaaaatatagttcaaatccatgaatatcttaatataatttttcacttaaaaata |
27259819 |
T |
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| Q |
118 |
gaaacactgcaactaaaaatataattaatcatagcctttaatgttcaagatcaagacaatgacgctaaa |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27259820 |
gaaacactgcaactaaaaatataattaatcatagcctttaatgttcaagatcaagacaatgacgctaaa |
27259888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 38315159 - 38315296
Alignment:
| Q |
28 |
tgcttcccatactccgacggtcattcatatgctcctgaaaatatagttcaaatctatgaatatcttaacataatttttcacttaaaaatagaaacactgc |
127 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38315159 |
tgcttcccatactccgacagtcattcatatgctcctgaaaatatagttcaaatccatgaatatcttaatataatttttcacttaaaaatagaaacactgc |
38315258 |
T |
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| Q |
128 |
aactaaaaatataattaatcatagcctttaatgttcaa |
165 |
Q |
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|||||||| |||||||||| ||||||||||||||||| |
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| T |
38315259 |
aactaaaatcataattaatcctagcctttaatgttcaa |
38315296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 8504 - 8433
Alignment:
| Q |
115 |
atagaaacactgcaactaaaaatataattaatcatagcctttaatgttcaagatcaagacaatgacgctaaa |
186 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
8504 |
atagaaacactgcaactaaaaatataattaatcctagcctttaatgttcaagattaagacaatgacgctaaa |
8433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 2631508 - 2631579
Alignment:
| Q |
115 |
atagaaacactgcaactaaaaatataattaatcatagcctttaatgttcaagatcaagacaatgacgctaaa |
186 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
2631508 |
atagaaacactgcaactaaaaatataattaatcctagcctttaatgttcaagattaagacaatgacgctaaa |
2631579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 33716234 - 33716132
Alignment:
| Q |
196 |
attccatgtagttgatttcatctcaatattatgtttgtcaacggattaacaagcaacagaaatttggaaagaaagtttaacttgattagaaatataactt |
295 |
Q |
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||||| || |||| |||||||| |||||||||||||| |||| |||| |||| |||||||||||| || |||| |||||||| |||| |||| | |||| |
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| T |
33716234 |
attccgtgcagttaatttcatccaaatattatgtttgttaacgtattaccaagaaacagaaatttgaaaggaaaatttaacttcattaaaaatcttactt |
33716135 |
T |
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| Q |
296 |
act |
298 |
Q |
| |
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||| |
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| T |
33716134 |
act |
33716132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 21275086 - 21275012
Alignment:
| Q |
220 |
aatattatgtttgtcaacggattaacaagcaacagaaatttggaaagaaagtttaacttgattagaaatataactt |
295 |
Q |
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||||| |||||||| |||||||||||||||| |||||| | | |||| | |||||||| |||||||||||||||| |
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| T |
21275086 |
aatatcatgtttgtttacggattaacaagcaatagaaatgtcg-aagacaatttaacttcattagaaatataactt |
21275012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 21178082 - 21178045
Alignment:
| Q |
294 |
ttactaaattaatttgtttctacatttcctattgacaa |
331 |
Q |
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|||||||||| |||||||||||||||||||||| |||| |
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| T |
21178082 |
ttactaaattcatttgtttctacatttcctattaacaa |
21178045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 1478531 - 1478480
Alignment:
| Q |
21 |
tgaatgttgcttcccatactccgacggtcattcatatgctcctgaaaatata |
72 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1478531 |
tgaatgttgcttcccatactccgacagtcattcatatgctcctgaaaatata |
1478480 |
T |
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