View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_34 (Length: 374)
Name: NF16757_high_34
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 2424228 - 2424571
Alignment:
| Q |
15 |
ggcatcacaatacgtattgatggtacactagttgcaacatccaactatggtgttattggaaatgaggggagttggttgctttttgatgatgttgatggag |
114 |
Q |
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| T |
2424228 |
ggcatcacagtacgtattgatggtacactagttgcaacatccaactatggtgtaattggaaatgaggggagttggttgctttttgatgatgttgatggag |
2424327 |
T |
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| Q |
115 |
tttcaattattggtggcatccttgatggtcaaggcacaagtttgtgggattgtaaaagatccggcaatagttgcccaaccggtgctacggtatagattta |
214 |
Q |
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| T |
2424328 |
tttcaattattggtggcatccttgatggtcaaggcacaagtttgtgggattgtaaaagatccagcaagagttgcccaactggtgctacggtatagattta |
2424427 |
T |
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| Q |
215 |
ctttcttaaaactttactaactttgtgttttatcccgaacgaaaacatatcggtaattagttgttacaaacattaaaaattaatattacattagttcgag |
314 |
Q |
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| T |
2424428 |
ctttcttaaaactttactaactttgtgttttatcccgaacgagaacatatcggtaattagttgttacaaacattgaaaattaatattacattagttcgag |
2424527 |
T |
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| Q |
315 |
tagaacttgattcaaacttcttaagaagtatcttgtgtttgaaa |
358 |
Q |
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| T |
2424528 |
tagaacttgattcaaacttcttaagaagtatcttgtgttcgaaa |
2424571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 2433174 - 2433269
Alignment:
| Q |
258 |
aacatatcggtaattagttgttacaaacattaaaaattaatattacattagttcgagtagaacttgattcaaacttcttaagaagtatcttgtgtt |
353 |
Q |
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| T |
2433174 |
aacatattggtaattagttgttacaaacgttaaaaatcaataatacattggttcgagtaaaacttgattcaaactttttaagaaataacttgtgtt |
2433269 |
T |
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