View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_36 (Length: 370)
Name: NF16757_high_36
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_36 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 121 - 370
Target Start/End: Complemental strand, 43607476 - 43607227
Alignment:
| Q |
121 |
cctacgtcacgttgatcattttgggcctcctgaactttatcttgggcctcctgaaccttatcttgggccatgctttcaacacgatcacgatcttccaaat |
220 |
Q |
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| T |
43607476 |
cctacgtcacgttgatcattttgggcctcctgaactttatcttgggcctcctgaaccttatcttgggccatgctttcaacacgatcacgatcttccaaat |
43607377 |
T |
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| Q |
221 |
taatctgagattcatgccccaaagtctcatccgcatccaaacgtggcggctttgcaattgcatgatgatgatgtttaacgttaaccttctccagaaaccg |
320 |
Q |
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| T |
43607376 |
taatctgagattcatgccccaaagtctcatccgcatcaaaacgtggcggctttgcaattgcatgatgatgatgtttaacgttaaccttctccagaaaccg |
43607277 |
T |
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| Q |
321 |
tgaacgacggagatatgatgctacccaagcaaaggaagaaagcgaggtaa |
370 |
Q |
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| T |
43607276 |
tgaacgacggagatatgatgctacccaagcaaaggaagaaagcgaggtaa |
43607227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 43607583 - 43607505
Alignment:
| Q |
14 |
atcaggaaacagagaaaatagtgactcctcatacgtcatagtaaactcttattcacttaacgaaccaaactcatgaaga |
92 |
Q |
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| T |
43607583 |
atcaggaaacagagaaaatagtgactcctcatacgtcatagtaaactcttgttcacttaacgaaccaaactcatgaaga |
43607505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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