View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_38 (Length: 339)
Name: NF16757_high_38
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 25 - 332
Target Start/End: Original strand, 4996918 - 4997225
Alignment:
| Q |
25 |
cttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttccaaacacagat |
124 |
Q |
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| T |
4996918 |
cttttcactctcaagagactatgaaattcttcttcatgtaaagaacacacaaattgatgacaaaaacaaaagtctcaatgattggcttccaaacacagat |
4997017 |
T |
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| Q |
125 |
cataatccttgtaactggagaggcataacctgcgattcgtggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatggtgattttccat |
224 |
Q |
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| T |
4997018 |
cataatccttgtaactggagaggcataacctgcgattcgcggaataaatccgttgtatcaatcgacctcacagaaaccggtatttatggtgattttccat |
4997117 |
T |
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| Q |
225 |
ctaatttctgtcatattccaacactccaaaatctttcacttgctaccaattttcttggtaatgctatttcctcacattccatgctaccctgctcccacct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997118 |
ctaatttctgtcatattccaacactccaaaatctttcacttgctacgaattttcttggtaatgctatttcctcacattccatgctaccctgctcccacct |
4997217 |
T |
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| Q |
325 |
tcatttct |
332 |
Q |
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|||||||| |
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| T |
4997218 |
tcatttct |
4997225 |
T |
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