View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16757_high_42 (Length: 331)
Name: NF16757_high_42
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 22450532 - 22450325
Alignment:
| Q |
1 |
attttttgttttgtttaagagaggggtaaattaatgaacattgaggattatgtggaacgatcaaattgaagaaaagaaaacaaggcaagtggggggagat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
22450532 |
attttttgttttgtttaagagagaggtaaattaatgaacattgaggattatgtggaacgatcaaattgaagaaaagaaaacaaggtaagtggggg-agat |
22450434 |
T |
|
| Q |
101 |
agtatatagatggtgcaaagtattattgtgagggataaagcaatccatgggtaaaaatttatggtccattatggaccaattttcccataggtccatttta |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22450433 |
agtatatcgatggtgcaaagtattattgtgagggataaaacaatctatgagtaaaaatttatggtccattatggaccaattttcccacaggtccatttta |
22450334 |
T |
|
| Q |
201 |
tacggaacc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
22450333 |
tacggaacc |
22450325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 4764718 - 4764616
Alignment:
| Q |
210 |
catcagtcaagtgttcaattctaccttaatctatcttaattttcctcttcatttgttgttacttgttatcacccattgaagtccactgccacgccgagta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4764718 |
catcagtcaagtgttcaattctaccttaatctatcttaattttcatcttcatttgttgttacttgttatcacccattgaagtccactgccacgctgagta |
4764619 |
T |
|
| Q |
310 |
ttc |
312 |
Q |
| |
|
||| |
|
|
| T |
4764618 |
ttc |
4764616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 51700224 - 51700121
Alignment:
| Q |
107 |
tagatggtgcaaagtattattgtgagggataaagcaatccatgggtaaaaatttatggtccattatggaccaattttcccataggtccattttatacgga |
206 |
Q |
| |
|
||||||||| ||| |||||||||||||| | | ||||||| |||||||| | ||||||| |||||||||||||| | | ||| ||||||||||||| |
|
|
| T |
51700224 |
tagatggtgtaaattattattgtgagggtttgatcaatccaaaggtaaaaagtagtggtccactatggaccaatttttctaatggttcattttatacgga |
51700125 |
T |
|
| Q |
207 |
accc |
210 |
Q |
| |
|
|||| |
|
|
| T |
51700124 |
accc |
51700121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 38973854 - 38973976
Alignment:
| Q |
87 |
aagtggggggagatagtatatagatggtgcaaagtattattgtgagggataaagcaatccatgggtaaaaatttatggtccattatggaccaattttccc |
186 |
Q |
| |
|
|||||| |||||||| | | ||||||||| ||| |||||||||||| | | | ||||||| |||||||| | ||||||| |||||||||||||| | |
|
|
| T |
38973854 |
aagtggagggagataatgtgtagatggtgtaaattattattgtgagagtttgatcaatccaaaggtaaaaagtagtggtccactatggaccaatttttct |
38973953 |
T |
|
| Q |
187 |
ataggtccattttatacggaacc |
209 |
Q |
| |
|
| ||| |||||||||||||||| |
|
|
| T |
38973954 |
aatggttcattttatacggaacc |
38973976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 6198482 - 6198440
Alignment:
| Q |
92 |
gggggagatagtatatagatggtgcaaagtattattgtgaggg |
134 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
6198482 |
gggggagagagtgtatatatggtgcaaagtattattgtgaggg |
6198440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University