View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16757_high_44 (Length: 324)
Name: NF16757_high_44
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 22619005 - 22619301
Alignment:
| Q |
21 |
gatggatggccgttgtaggctagcctttgcatgaacatgtcctttgttgcattaggcgaatcatgagccaaaaacctcagataatttgttggaagcaatc |
120 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
22619005 |
gatgcatgtccgttgtaggctagcctttgcatgaacatgtcctttgttgcactaggataatcatgagctaaaaacctcagataatttgttcgaagcaatc |
22619104 |
T |
|
| Q |
121 |
tgaatgcagctttcttgtcgacaagtcggcgatgacaacgagacgtttcttggaaggtgaagagatctcagacccc-aaaaacagctatctttacggtaa |
219 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22619105 |
tgaatgttgttttcttgtcgacaagtcggcgatgacaacgagacgtttctttgaaggtgaagagatctcagaccccaaaaaacagctatctttacggtaa |
22619204 |
T |
|
| Q |
220 |
taaagtctgaagaacaatagtggaatggtgctttacgtcaagaaagaggatttcttatagataatggaagtaactgacacattgatgctcttcatctc |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
22619205 |
taaagtctgaaggacaatagtggaatggttttttatgtcaagaaagagg-gttcttatagataatggaagtaattgagacattgatgctcttcatctc |
22619301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 17528663 - 17528531
Alignment:
| Q |
78 |
gaatcatgagccaaaaacctcagataatttgttggaagcaatctgaatgcagctttcttgtcgacaagtcggcgatgacaacgagacgtttcttggaagg |
177 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||||||||||||||| | | ||||||||| ||||| | |||||||||||| ||| || |||| |
|
|
| T |
17528663 |
gaatcatcagcaaaaaacctcagatattttgttggaagcaatctgaaagtggttttcttgtccacaagctgtaaatgacaacgaga-ttttttttgaagt |
17528565 |
T |
|
| Q |
178 |
tgaagagatctcagaccccaaaaacagctatctt |
211 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||| |
|
|
| T |
17528564 |
tgaagatatctctgatcccaaaaacagctatctt |
17528531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University