View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_47 (Length: 313)
Name: NF16757_high_47
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 305
Target Start/End: Original strand, 30376930 - 30377213
Alignment:
| Q |
22 |
gtttggtatgtcaaaatattaattaaggtctaagtttggctcgttcataagaaattcaaatatatcaatcgtctggcctaagctaatcttctggataatt |
121 |
Q |
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| T |
30376930 |
gtttggtctgtcaaaatattaattaaggtctaagtttggctcgttcataagaaattcaaatatatcaatcgtctggcctaagctaatcttctggataatt |
30377029 |
T |
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| Q |
122 |
tgctcggatgccagtctaagccaattccgcggatacaacaatcctctgaatggatcgaattgaagatcaagtcgtaaagctttgatgacatgattctctg |
221 |
Q |
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| T |
30377030 |
tgctcggatgccagtctaagccaattccgcggatacaacaatcctctgaatggatcgaattgaagatcaagtcgtaaagctttgatgacatgattctctg |
30377129 |
T |
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| Q |
222 |
aaaatctcttcatcaaaaagagatcatgtttaaagaaacgaagacaaccagaaaatagtgcaacctatccaacttctctctgct |
305 |
Q |
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| T |
30377130 |
aaaatctcttcatcaaaaagagatcatgtttaaagaaacgaagacaaccagaaaatagtgcaacctatccaacttctctctgct |
30377213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 30374356 - 30374392
Alignment:
| Q |
25 |
tggtatgtcaaaatattaattaaggtctaagtttggc |
61 |
Q |
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| T |
30374356 |
tggtctgtcaaaatattaattaaggtctaaatttggc |
30374392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 10920700 - 10920650
Alignment:
| Q |
152 |
ggatacaacaatcctctgaatggatcgaattgaagatcaagtcgtaaagct |
202 |
Q |
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| T |
10920700 |
ggatacgacgatcctctaaatggatcaaattgaagatcaagtcataaagct |
10920650 |
T |
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