View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_high_49 (Length: 303)

Name: NF16757_high_49
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_high_49
NF16757_high_49
[»] chr2 (2 HSPs)
chr2 (83-275)||(8382429-8382622)
chr2 (275-303)||(38724355-38724383)
[»] chr3 (3 HSPs)
chr3 (267-302)||(1901975-1902010)
chr3 (267-302)||(1911421-1911456)
chr3 (264-303)||(35376599-35376638)
[»] chr1 (3 HSPs)
chr1 (272-303)||(49615323-49615354)
chr1 (269-303)||(11947784-11947818)
chr1 (275-303)||(52233269-52233297)
[»] chr8 (1 HSPs)
chr8 (270-303)||(12655912-12655945)
[»] chr6 (2 HSPs)
chr6 (274-303)||(25127881-25127910)
chr6 (267-303)||(9188992-9189028)
[»] chr4 (3 HSPs)
chr4 (274-303)||(36444443-36444472)
chr4 (270-303)||(54165209-54165242)
chr4 (275-303)||(1562584-1562612)
[»] scaffold0318 (1 HSPs)
scaffold0318 (273-301)||(18329-18357)
[»] chr5 (2 HSPs)
chr5 (271-303)||(12878747-12878779)
chr5 (275-303)||(35098780-35098808)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 83 - 275
Target Start/End: Original strand, 8382429 - 8382622
Alignment:
Q  83 gctttatagaatttggtaggtgtggggaagtaagaatcattcattattgtt-gtgggagcattgatgtggacgtgggtttttcttacctttttacttgtg 181  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||    
T  8382429 gctttatagaatttggtaggtgtgggcaagtaagaatcattcattattgtttgtgggagcattggtgtggacgtgggtttttcttacctttttactggtg 8382528  T
Q  182 ttttggaatctagttggttgatctctgctaagagaaacagaaagggaaagagaaagtgtgggcaataataatagtggtttgatttctattaaaa 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8382529 ttttggaatctagttggttgatctctgctaagagaaacagaaagggaaagagaaagtgtgggcaataataatagtggtttgatttctattaaaa 8382622  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 38724383 - 38724355
Alignment:
Q  275 ataaagagaaatgatatttgtacaaccat 303  Q
    |||||||||||||||||||||||||||||    
T  38724383 ataaagagaaatgatatttgtacaaccat 38724355  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 1902010 - 1901975
Alignment:
Q  267 ctattaaaataaagagaaatgatatttgtacaacca 302  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1902010 ctattaaaaaaaagagaaatgatatttgtacaacca 1901975  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 1911456 - 1911421
Alignment:
Q  267 ctattaaaataaagagaaatgatatttgtacaacca 302  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1911456 ctattaaaaaaaagagaaatgatatttgtacaacca 1911421  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 35376638 - 35376599
Alignment:
Q  264 tttctattaaaataaagagaaatgatatttgtacaaccat 303  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  35376638 tttcttttaaattaaagagaaatgatatttgtacaaccat 35376599  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 49615354 - 49615323
Alignment:
Q  272 aaaataaagagaaatgatatttgtacaaccat 303  Q
    ||||||||||||||||||||||||||||||||    
T  49615354 aaaataaagagaaatgatatttgtacaaccat 49615323  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 11947784 - 11947818
Alignment:
Q  269 attaaaataaagagaaatgatatttgtacaaccat 303  Q
    |||||||| ||||||||||||||||||||||||||    
T  11947784 attaaaattaagagaaatgatatttgtacaaccat 11947818  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 52233297 - 52233269
Alignment:
Q  275 ataaagagaaatgatatttgtacaaccat 303  Q
    |||||||||||||||||||||||||||||    
T  52233297 ataaagagaaatgatatttgtacaaccat 52233269  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 12655912 - 12655945
Alignment:
Q  270 ttaaaataaagagaaatgatatttgtacaaccat 303  Q
    ||||||| ||||||||||||||||||||||||||    
T  12655912 ttaaaattaagagaaatgatatttgtacaaccat 12655945  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 25127910 - 25127881
Alignment:
Q  274 aataaagagaaatgatatttgtacaaccat 303  Q
    ||||||||||||||||||||||||||||||    
T  25127910 aataaagagaaatgatatttgtacaaccat 25127881  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 9189028 - 9188992
Alignment:
Q  267 ctattaaaataaagagaaatgatatttgtacaaccat 303  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  9189028 ctataaaaattaagagaaatgatatttgtacaaccat 9188992  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 36444472 - 36444443
Alignment:
Q  274 aataaagagaaatgatatttgtacaaccat 303  Q
    ||||||||||||||||||||||||||||||    
T  36444472 aataaagagaaatgatatttgtacaaccat 36444443  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 54165242 - 54165209
Alignment:
Q  270 ttaaaataaagagaaatgatatttgtacaaccat 303  Q
    |||||| |||||||||||||||||||||||||||    
T  54165242 ttaaaaaaaagagaaatgatatttgtacaaccat 54165209  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 1562612 - 1562584
Alignment:
Q  275 ataaagagaaatgatatttgtacaaccat 303  Q
    |||||||||||||||||||||||||||||    
T  1562612 ataaagagaaatgatatttgtacaaccat 1562584  T

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Target: scaffold0318 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 301
Target Start/End: Complemental strand, 18357 - 18329
Alignment:
Q  273 aaataaagagaaatgatatttgtacaacc 301  Q
    |||||||||||||||||||||||||||||    
T  18357 aaataaagagaaatgatatttgtacaacc 18329  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 12878747 - 12878779
Alignment:
Q  271 taaaataaagagaaatgatatttgtacaaccat 303  Q
    |||| ||||||||||||||||||||||||||||    
T  12878747 taaagtaaagagaaatgatatttgtacaaccat 12878779  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 35098808 - 35098780
Alignment:
Q  275 ataaagagaaatgatatttgtacaaccat 303  Q
    |||||||||||||||||||||||||||||    
T  35098808 ataaagagaaatgatatttgtacaaccat 35098780  T

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