View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16757_high_55 (Length: 274)
Name: NF16757_high_55
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 17618884 - 17619130
Alignment:
| Q |
17 |
aacacatgttctggagtttccagccaagcaagtca--------gttgtaacagaaaccttcaacactgatactcctcttacagaagctgtgaaattccaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17618884 |
aacacatgttctggagtttccagccaagcaagtcaacctttcagttgtaacagaaaccttcaacactgatactcctcttacagaagctgcgaaattccaa |
17618983 |
T |
|
| Q |
109 |
gaggggttcgtaatgctacagtcgctaatagagaattacttgttgggggagttagaagttgattgcatagttagtgacttgtgtcatccttggactgtgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17618984 |
gaggggttcgtaatgctacagtcgctaatagagaattacttgttgggggagttagaagttgattgcatagttagtgacttgtgtcatccttggactgtgg |
17619083 |
T |
|
| Q |
209 |
aagttgcaagcaagttaggtattccaagaattgttttctctcctgcg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17619084 |
aagttgcaagcaagttaggtattccaagaattgttttctctcctgcg |
17619130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 14717224 - 14716978
Alignment:
| Q |
17 |
aacacatgttctggagtttccagccaagcaagtca--------gttgtaacagaaaccttcaacactgatactcctcttacagaagctgtgaaattccaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14717224 |
aacacatgttctggagtttccagccaagcaagtcaacctttcagttgtaacagaaaccttcaacactgatactcctcttacagaagctgcaaaattccaa |
14717125 |
T |
|
| Q |
109 |
gaggggttcgtaatgctacagtcgctaatagagaattacttgttgggggagttagaagttgattgcatagttagtgacttgtgtcatccttggactgtgg |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14717124 |
gaggggttcgtaatgctgcagtcgctaatagagaattacttgttgggggagttagaagttgattgcatagttagtgacttgtgtcatccttggactgtgg |
14717025 |
T |
|
| Q |
209 |
aagttgcaagcaagttaggtattccaagaattgttttctctcctgcg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14717024 |
aagttgcaagcaagttaggtattccaagaattgttttctctcctgcg |
14716978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 12611461 - 12611596
Alignment:
| Q |
110 |
aggggttcgtaatgctacagtcgctaatagagaattacttgttgggggagttagaagttgattgcatagttagtgacttgtgtcatccttggactgtgga |
209 |
Q |
| |
|
|||||||| |||||||||| | | |||||||||||||||||| |||||| | ||||||||||||||| |||||||| ||| | | ||||| ||||| |
|
|
| T |
12611461 |
aggggttcataatgctacaacctcaaatagagaattacttgtttggggagattgaagttgattgcataattagtgacatgttttacgtatggaccgtgga |
12611560 |
T |
|
| Q |
210 |
agttgcaagcaagttaggtattccaagaattgtttt |
245 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
12611561 |
tgttgcagccaagttaggtattccaagaattgtttt |
12611596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University