View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_57 (Length: 268)
Name: NF16757_high_57
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_57 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 30574231 - 30574473
Alignment:
| Q |
9 |
agatgaaagacgtagtaaacaagacagaatggtgttgaaacacaatagtacagagcaaagatcagtgaatcaaagtggctgtaggctgtagcagactgtc |
108 |
Q |
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| T |
30574231 |
agatgaaagacgtagtaaacaagacagaatggtgttgaaacaca-tagtacagggcaaagatcagtgaatcaaagtggctgtaggctgtagcagactgtc |
30574329 |
T |
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| Q |
109 |
gttggaaatagaaaagcagcagacttgtaatatggtcttttgctttaaaatatagcagcagacattgacagatttttctataaggaacatcttgatgcat |
208 |
Q |
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| T |
30574330 |
cttggaaatagaaaagcagcagacttgtaatatggttttttgctttaaaatatagcagcagacattgacagatttttctataaggaacatcttgatgcat |
30574429 |
T |
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| Q |
209 |
gtgaaactttagcataataacttatgcaaatgttatggttgtcc |
252 |
Q |
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| T |
30574430 |
gtgaaactttagcataataacttatgcaaatgttatgggtgtcc |
30574473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 30570457 - 30570568
Alignment:
| Q |
140 |
atggtcttttgctttaaaatatagcagcagacattgacagatttttctataaggaacatcttgatgcatgtgaaactttagcataataacttatgcaaat |
239 |
Q |
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| T |
30570457 |
atggtcttttgctttaaaatgtagcagcagacattgacagatttttctacaaggaacatc-tgatgcatgtgaaactttagcataataactgatgcaaat |
30570555 |
T |
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| Q |
240 |
gttatggttgtcc |
252 |
Q |
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| T |
30570556 |
gttatggttgtcc |
30570568 |
T |
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