View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_59 (Length: 262)
Name: NF16757_high_59
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 29712660 - 29712413
Alignment:
| Q |
1 |
ttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaatatataccaaactctcttattgattgcaatttagatgc |
100 |
Q |
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| T |
29712660 |
ttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaatatataccaaattctcttattgattgcaatttagatgc |
29712561 |
T |
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| Q |
101 |
atatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgcttatgataagttaactcgctta |
200 |
Q |
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| T |
29712560 |
atatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgcttatgataagttaactcgctta |
29712461 |
T |
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| Q |
201 |
gggcttttctcattgagagctgatgcgtggaacgaaattgagggtgat |
248 |
Q |
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| T |
29712460 |
gggcttttctcattgagagctgatgcgtggaacgaaattgagggtgat |
29712413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 246
Target Start/End: Original strand, 29688023 - 29688240
Alignment:
| Q |
32 |
tctatggaatccatccactggagttcacaaatatataccaa--act-ctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgac |
128 |
Q |
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| T |
29688023 |
tctatggaatccatccaccggagttcacagacaaataccctttactactgttattgattccaatttagaagcaaagtatttctatggttttgggtatgat |
29688122 |
T |
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| Q |
129 |
gagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctgatgcgt |
228 |
Q |
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| T |
29688123 |
gagtctactgatgattacctggttctttcaatgtgctatgatccgagtgcacgtggtttgttatctcacttggggcttttctcattaagagctaatacgt |
29688222 |
T |
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| Q |
229 |
ggaacgaaattgagggtg |
246 |
Q |
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| T |
29688223 |
ggaaggaaatggagggtg |
29688240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 29696173 - 29696261
Alignment:
| Q |
81 |
attgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtcatatga |
169 |
Q |
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| T |
29696173 |
attgattccaatccagatgcaaattatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga |
29696261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 47452068 - 47451954
Alignment:
| Q |
34 |
tatggaatccatccactggagttcacaaatatataccaaactctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtc |
133 |
Q |
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| T |
47452068 |
tatggaatccatccactggagttcacaaacaaatacctttgcctccttttggttccaatgtagatgcaaattatttttattggtttgggtatgacgagtt |
47451969 |
T |
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| Q |
134 |
aagggatgattactt |
148 |
Q |
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| T |
47451968 |
aacagatgattactt |
47451954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 24340475 - 24340510
Alignment:
| Q |
205 |
ttttctcattgagagctgatgcgtggaacgaaattg |
240 |
Q |
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| T |
24340475 |
ttttctcattgagagctaatgcgtggaacgaaattg |
24340510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 24352840 - 24352875
Alignment:
| Q |
205 |
ttttctcattgagagctgatgcgtggaacgaaattg |
240 |
Q |
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| T |
24352840 |
ttttctcattgagagctaatgcgtggaacgaaattg |
24352875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 24310163 - 24310205
Alignment:
| Q |
106 |
atttatatggttttgggtatgacgagtcaagggatgattactt |
148 |
Q |
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| T |
24310163 |
atttctatggttttggttatgacgagtcaagagatgattactt |
24310205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 48852757 - 48852797
Alignment:
| Q |
205 |
ttttctcattgagagctgatgcgtggaacgaaattgagggt |
245 |
Q |
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| T |
48852757 |
ttttctcattgagagctaatgcatggaaagaaattgagggt |
48852797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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