View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_high_63 (Length: 253)

Name: NF16757_high_63
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_high_63
NF16757_high_63
[»] chr7 (9 HSPs)
chr7 (15-253)||(39567311-39567549)
chr7 (15-193)||(39360866-39361044)
chr7 (15-225)||(39541285-39541498)
chr7 (15-192)||(39550579-39550756)
chr7 (15-193)||(39346315-39346493)
chr7 (15-193)||(39335057-39335235)
chr7 (15-170)||(39577201-39577356)
chr7 (16-170)||(39624163-39624317)
chr7 (17-57)||(39591791-39591831)
[»] chr4 (2 HSPs)
chr4 (95-165)||(2874415-2874485)
chr4 (29-141)||(2884343-2884455)
[»] chr3 (1 HSPs)
chr3 (116-165)||(49770458-49770507)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 39567549 - 39567311
Alignment:
Q  15 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39567549 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 39567450  T
Q  115 cggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtgtcattgtgtcttctctcattttttctaaaagtttttataattta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39567449 cggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtgtcattgtgtcttctctcattttttctaaaagtttttataattta 39567350  T
Q  215 tactatgtaatagtaaattcaattttatctataaaaatt 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39567349 tactatgtaatagtaaattcaattttatctataaaaatt 39567311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 39360866 - 39361044
Alignment:
Q  15 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 114  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  39360866 cagagacttacaatctttttgacgacattatactactctctgatagtcacattatttaccaaggtccccgggaacacgtgcttgaatttttcgaatcaat 39360965  T
Q  115 cggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtgtcattgtgtcttctctcattttt 193  Q
     ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  39360966 tggttttaaatgtccaaataggaaaggagtggcagattttttgcaagaagtgtgtgtcattgtgtcttctctcattttt 39361044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 39541498 - 39541285
Alignment:
Q  15 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 114  Q
    ||||||| | |||||||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||| ||||||||    
T  39541498 cagagacattcaatctttttgatgaaattattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatttttcgaatcaat 39541399  T
Q  115 cggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtgtcattgtgtcttctctcattttttctaa---aagtttttataat 211  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||   ||| |||||||||    
T  39541398 cggttttaaatgtcctgataggaaaggagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcattttttgaaaaagaagcttttataat 39541299  T
Q  212 ttatactatgtaat 225  Q
    ||||||| ||||||    
T  39541298 ttatactgtgtaat 39541285  T

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Target: chr7; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 39550756 - 39550579
Alignment:
Q  15 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||| ||||||||    
T  39550756 cagagacttacaatctttttgacgacattattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatttttcgaatcaat 39550657  T
Q  115 cggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtgtcattgtgtcttctctcatttt 192  Q
     |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  39550656 tggttttaaatgtcctgataggaaaggagtggcagattttttgcaagaagtgagtgtcattgtgtcttttatcatttt 39550579  T

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Target: chr7; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 39346315 - 39346493
Alignment:
Q  15 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 114  Q
    |||| ||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||  |||||||    
T  39346315 cagaaacttacaatctattcgacgacattattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcaaatcaat 39346414  T
Q  115 cggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtgtcattgtgtcttctctcattttt 193  Q
     ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39346415 tggttttaaatgtccaaataggaaaggagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcattttt 39346493  T

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Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 39335057 - 39335235
Alignment:
Q  15 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 114  Q
    |||| ||||||||||| ||||||  | |||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  39335057 cagaaacttacaatctatttgacagcattattctactctctgatagtcatattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaat 39335156  T
Q  115 cggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtgtcattgtgtcttctctcattttt 193  Q
     ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  39335157 tggttttaaatgtccaaataggaaaggagtggcggattttttgcaagaagtgagtttcattgcgtcttctctcattttt 39335235  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 39577356 - 39577201
Alignment:
Q  15 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 114  Q
    ||||||||||  |||||||||||||| ||||||||||||||||  | | |||| | ||||| |||||  | |||||||| |||||||||||||  ||| |    
T  39577356 cagagacttatgatctttttgacgacattattctactctctgaggggcacattgtgtaccagggtccttgtgaacacgtgcttgaattttttgcttcatt 39577257  T
Q  115 cggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtg 170  Q
     ||||| || ||||| || || |||  ||||||||| || || |||||||| ||||    
T  39577256 aggtttcaagtgtcctgaaagaaaatcagtggcagactttttacaagaagtaagtg 39577201  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 39624317 - 39624163
Alignment:
Q  16 agagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaatc 115  Q
    ||||||||||||||||||||| ||| ||||| ||||||| ||| | | |||| | |||||||||||  | | ||| || ||||| |||||||  |||||     
T  39624317 agagacttacaatctttttgatgacattattttactctccgatggacacattgtgtaccaaggtccttgtgtacaagtgcttgatttttttgcttcaata 39624218  T
Q  116 ggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagtgagtg 170  Q
    |||||||  ||||| || ||||||  ||||| ||| || || |||||||| ||||    
T  39624217 ggttttatgtgtcctgagaggaaaccagtggtagactttttacaagaagtaagtg 39624163  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 39591831 - 39591791
Alignment:
Q  17 gagacttacaatctttttgacgacgttattctactctctga 57  Q
    ||||||||| ||||||| |||||| ||||||||||||||||    
T  39591831 gagacttactatcttttcgacgacattattctactctctga 39591791  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 2874415 - 2874485
Alignment:
Q  95 cttgaattttttgaatcaatcggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 165  Q
    ||||||||||||||||| || ||||| |||||||| || |||||||| || || |||||| | ||||||||    
T  2874415 cttgaattttttgaatctattggtttcaaatgtcctgagaggaaaggcgttgctgatttccttcaagaagt 2874485  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 2884343 - 2884455
Alignment:
Q  29 ctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaatcggttttaaatgtc 128  Q
    |||||||| ||| |||||||  | |||||| |||  ||| | |||||||| || || |||||  | |||||||||||||||||| | ||||| |||||||    
T  2884343 ctttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtc 2884442  T
Q  129 cagataggaaagg 141  Q
    | || ||||||||    
T  2884443 ctgagaggaaagg 2884455  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 49770458 - 49770507
Alignment:
Q  116 ggttttaaatgtccagataggaaaggagtggcagatttcttgcaagaagt 165  Q
    ||||| ||||||||||| ||||||||||| |||||||| || ||||||||    
T  49770458 ggtttcaaatgtccagagaggaaaggagtagcagattttttacaagaagt 49770507  T

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