View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_high_64 (Length: 247)

Name: NF16757_high_64
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_high_64
NF16757_high_64
[»] chr7 (5 HSPs)
chr7 (1-37)||(18446571-18446607)
chr7 (1-37)||(26389161-26389197)
chr7 (1-37)||(1715845-1715880)
chr7 (1-37)||(1773704-1773740)
chr7 (1-37)||(2576967-2577003)
[»] chr1 (1 HSPs)
chr1 (1-37)||(12685087-12685123)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-37)||(48376-48412)
[»] chr8 (5 HSPs)
chr8 (1-37)||(3479032-3479068)
chr8 (1-37)||(3785935-3785971)
chr8 (1-37)||(19472627-19472663)
chr8 (1-37)||(19543552-19543588)
chr8 (1-37)||(19589108-19589144)
[»] chr6 (1 HSPs)
chr6 (1-38)||(21146967-21147004)
[»] chr5 (2 HSPs)
chr5 (1-37)||(4215220-4215255)
chr5 (1-37)||(18587516-18587552)
[»] chr4 (1 HSPs)
chr4 (1-33)||(46432433-46432465)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18446607 - 18446571
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  18446607 ctaactctaaaatgagtataactaactatatttcaac 18446571  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26389197 - 26389161
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  26389197 ctaactctaaaatgagtataactacctatatttcaac 26389161  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1715845 - 1715880
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1715845 ctaactctaaa-tgagtataactaactatatttcaac 1715880  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1773704 - 1773740
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  1773704 ctaactctaaaatgagtataactacctataattcaac 1773740  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2577003 - 2576967
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  2577003 ctaactctaaaatgagtatcactatctatatttcaac 2576967  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12685123 - 12685087
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  12685123 ctaactctaaaatgagtataactaactatatttcaac 12685087  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48412 - 48376
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48412 ctaactctaaaatgagtataactacctatatttcaac 48376  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3479068 - 3479032
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3479068 ctaactctaaaatgagtataactatctatatttcaac 3479032  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3785935 - 3785971
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  3785935 ctaactctaaaatgagtatcactatctatatttcaac 3785971  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19472627 - 19472663
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  19472627 ctaactctaaaatgagtattactatctatatttcaac 19472663  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19543552 - 19543588
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  19543552 ctaactctaaaatgagtattactatctatatttcaac 19543588  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19589144 - 19589108
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  19589144 ctaactctaaaatgagtattactatctatatttcaac 19589108  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21146967 - 21147004
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaacg 38  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  21146967 ctaactttaaaatgagtataactatctatatttcaacg 21147004  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4215255 - 4215220
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  4215255 ctaactctaaa-tgagtataactaactatatttcaac 4215220  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18587516 - 18587552
Alignment:
Q  1 ctaactctaaaatgagtataactaactatatttcaac 37  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  18587516 ctaactctaaaataagtataactacctatatttcaac 18587552  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46432465 - 46432433
Alignment:
Q  1 ctaactctaaaatgagtataactaactatattt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  46432465 ctaactctaaaatgagtataactaactacattt 46432433  T

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