View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_73 (Length: 231)
Name: NF16757_high_73
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_73 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 43097122 - 43097316
Alignment:
| Q |
18 |
agggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaacactt |
117 |
Q |
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| T |
43097122 |
agggttgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcaaaagactggctctgaacctaccctctcagtttatagaacactt |
43097221 |
T |
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| Q |
118 |
atgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaatgactcaat |
212 |
Q |
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| T |
43097222 |
atgacttgtttatgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaacgactcaat |
43097316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 6779645 - 6779839
Alignment:
| Q |
18 |
agggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaacactt |
117 |
Q |
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|||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6779645 |
agggctgttcatggttgatagagaagatgaggcatttaaggtttttcaacgtatgcagaagactggctctgaacctaccctttcagtttatagaacactt |
6779744 |
T |
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| Q |
118 |
atgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaatgactcaat |
212 |
Q |
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| T |
6779745 |
atgacttgtttgtgtagaaagagcaaggtctcacgtgcattcactctttatttggaacatttgaagagccttcctagtcgggacaacgactcaat |
6779839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 17487433 - 17487239
Alignment:
| Q |
18 |
agggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaacactt |
117 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17487433 |
agggctgttcatggttgacagagaagatgaggcatttaaggtttttcaacgtatgcagaagactggctctgaacctaccctttcagtttatagaacactt |
17487334 |
T |
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| Q |
118 |
atgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaatgactcaat |
212 |
Q |
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| T |
17487333 |
atgacttgtttgtgtagaaagagcaaggtctcacgtgcattcactctttatttcgaacatttgaagagccttcctagtcgggacaacgactcaat |
17487239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 22424217 - 22424411
Alignment:
| Q |
18 |
agggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaacactt |
117 |
Q |
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|||| ||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
22424217 |
agggttgttcatggttgatagagaagatgaggcatttaaggtttttcaacgtatgcagaagactagctctgaacctaccctttcagtttatagaacactt |
22424316 |
T |
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| Q |
118 |
atgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaatgactcaat |
212 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
22424317 |
atgacttgtttgtgtagaaagagcaaggtctcatgtgcattcactctttatttggaacatttgaagagccttcctagtcgggacaacgactcaat |
22424411 |
T |
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