View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_high_79 (Length: 205)
Name: NF16757_high_79
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_high_79 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 3002707 - 3002882
Alignment:
| Q |
16 |
aaatacaaagttccaaaaccaaatgtaaagcgccaaactataatacaaagtgtctctcaccaaaacaattcactcagcaaaagggccaaacacataaaac |
115 |
Q |
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| T |
3002707 |
aaatacaaagttccaagaccaaatggaaagcgccaaactaaaatacaaagtgcctcccaccaaaacaattcactcagcaaaagagccaaacacataaaac |
3002806 |
T |
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| Q |
116 |
tc-nnnnnnntttcactcaccaaaaatttccctttaccatattcaaatctctctcctccatcgaagcgaggtccat |
190 |
Q |
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|| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3002807 |
tcaacaaaaatttcactcaccaaaaattcccctttaccatagccaaatctctctcctccatcgaagcgaggtccat |
3002882 |
T |
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