View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_1 (Length: 951)
Name: NF16757_low_1
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 875; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 875; E-Value: 0
Query Start/End: Original strand, 17 - 939
Target Start/End: Original strand, 38752001 - 38752923
Alignment:
| Q |
17 |
agatacttactaaaacaatgaataaggatatagagaacatagaagttagaatttgaagattctcacatatgtatttagttgcctaacaaagcttgagaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752001 |
agatacttactaaaacaatgaataaggatatatagaacatagaagttagaatttgaagattctcacatatgtatttagttgcctaacaaagcttgagaag |
38752100 |
T |
|
| Q |
117 |
ttgttatgcttgaaaaaattgggaagaagatctctagcaaactcaggaggcctccaaacaacaaatgtagtttcatcatcactccaagatacaatgtggt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752101 |
ttgttatgcttgaaaaaattgggaagaagatctctagcaaactcaggaggcctccaaacaacaaatgtagtttcatcatcactccaagatacaatgtggt |
38752200 |
T |
|
| Q |
217 |
cagtgagaggatcatcaacaagttggtatgtctttgtcaagaaaggagcaggcactgatttctgagactccatagtgaacaccatgttatcttcacacct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752201 |
cagtgagaggatcatcaacaagttggtatgtctttgtcaagaaaggagcaggcactgatttctgagactccatagtgaacaccatgttatcttcacacct |
38752300 |
T |
|
| Q |
317 |
ctctaatgtgaaagccatcacactaaaccaaagacttttgtgctacttatctaattttatgctttgttatgttatagtattctcttactcattcactaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38752301 |
ctctaatgtgaaagccatcacactaaaccaaagacttttgtgctacttatctaattttatgctttgttatgttatagtattctcttactcattcactaat |
38752400 |
T |
|
| Q |
417 |
gcaccaccgagtttaaaataacctctatcactctctttctattagagcaacacctcttattcacaaagaatacactaggtttgattagagagttcagcca |
516 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
38752401 |
gcaccaccaagtttaaaataacctctctcactctctttctattagagcaacacctcttattcacaatgaatacactaggtttgattagagagttcggcca |
38752500 |
T |
|
| Q |
517 |
attgtgcctacgtatccgactataaagtggttgtaatatttttccattaatcaaatttaggattgcatatatattacaaattttgtttaaatactacggt |
616 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38752501 |
attgtgcctacgtatccgactacaaagtggttgtaatatttttccattagtcaaatttcggattgcatatatattacaaattttatttaaatactacggt |
38752600 |
T |
|
| Q |
617 |
ccaatttacatgattatatctgatcagtagacaacttatgtttaaatactacagtccaatttataagattatctctgatcaataaacttatctatttacc |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
38752601 |
ccaatttacatgattatatctgatcagtagacaacttgtgtttaaatactacagtccaatttacaagattatctctgatcaataaacttgtctatttacc |
38752700 |
T |
|
| Q |
717 |
ggtaaactatgagtcatacccaacattttcacattataattttactctatgaaacaaaaatatatgacatatcatttaagtaactcttcttttggctatc |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38752701 |
ggtaaactatgagtcatacccaacattttcacattataattttactctatgaaacaaaaatatatgacatatcatttaagtaactcttcttttggctatc |
38752800 |
T |
|
| Q |
817 |
taaatagtttactaactttaagaagcatatgaccatgtcagtacaaacaatgagtttttgtaggataaactataataagatccaatgagtctattaatta |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38752801 |
taaatagtttactaactttaagaagcatatgaccatgtcagtacaaacaatgagtttttgtaggataaactataataagatccaatgagtctattaatta |
38752900 |
T |
|
| Q |
917 |
gttatttgattgttctctctgct |
939 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
38752901 |
gttatttgattgttctctctgct |
38752923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 624
Target Start/End: Original strand, 10842645 - 10842682
Alignment:
| Q |
587 |
atattacaaattttgtttaaatactacggtccaattta |
624 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| |
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|
| T |
10842645 |
atattacaatttgtgtttaaatactacggtccaattta |
10842682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 12478731 - 12478780
Alignment:
| Q |
105 |
aagcttgagaagttgttatgcttgaaaaaattgggaagaagatctctagc |
154 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || ||||| |||||||| |
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|
| T |
12478731 |
aagcttgagaaattgttatgcttgaaaaacttcggcagaaggtctctagc |
12478780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 46927073 - 46927245
Alignment:
| Q |
105 |
aagcttgagaagttgttatgcttgaaaaaattgggaagaagatctctagcaaactcaggaggcctccaaacaacaaatgtagtttcatcatcactccaag |
204 |
Q |
| |
|
||||| ||||||||||| || ||||| | || || || || ||||||||||| |||||||| | ||||||||| || || | ||||| |||| ||||| |
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|
| T |
46927073 |
aagctagagaagttgttgtgtttgaagtagttagggaggaggtctctagcaaattcaggaggacgccaaacaacgaaggtggagtcatcttcaccccaag |
46927172 |
T |
|
| Q |
205 |
atacaatgtggtcagtgagaggatcatcaacaagttggtatgtctttgtcaagaaaggagcaggcactgattt |
277 |
Q |
| |
|
| || ||||| || ||| ||||||||||||||||||||||| || || | ||| ||||| || |||||||| |
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|
| T |
46927173 |
aaacgatgtgatctgtggctggatcatcaacaagttggtatgttttggtgaggaatggagctgggactgattt |
46927245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 590 - 632
Target Start/End: Original strand, 34655354 - 34655396
Alignment:
| Q |
590 |
ttacaaattttgtttaaatactacggtccaatttacatgatta |
632 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
34655354 |
ttacaaatttactttaaatgctacggtccaatttacatgatta |
34655396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 632
Target Start/End: Original strand, 37410026 - 37410071
Alignment:
| Q |
587 |
atattacaaattttgtttaaatactacggtccaatttacatgatta |
632 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||||||| ||||| |
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|
| T |
37410026 |
atattacaatttgtttttaaatactacggtccaatttacaagatta |
37410071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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