View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_10 (Length: 585)

Name: NF16757_low_10
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_10
NF16757_low_10
[»] chr8 (1 HSPs)
chr8 (239-567)||(6524350-6524681)
[»] chr1 (2 HSPs)
chr1 (120-214)||(29321939-29322032)
chr1 (120-162)||(14106850-14106892)
[»] chr5 (1 HSPs)
chr5 (120-214)||(22362729-22362823)
[»] chr4 (2 HSPs)
chr4 (120-214)||(1493978-1494072)
chr4 (157-214)||(12105402-12105459)
[»] chr2 (2 HSPs)
chr2 (120-214)||(17641381-17641475)
chr2 (120-214)||(27008429-27008523)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 239 - 567
Target Start/End: Complemental strand, 6524681 - 6524350
Alignment:
Q  239 tggtcacaaacttctacagcttcaaacctgtagaagttattgtc--aagtaagttctgctgccatctttttt-ggccctccaccatgaggtctttcacaa 335  Q
    ||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6524681 tggtcacaaacttctacagcttcaaacctgtagaagttattattgtaagtaagttctgctgccatctttttttggccctccaccatgaggtctttcacaa 6524582  T
Q  336 ttcttatatcagtgttattggttgccttagagacagttttgaatccattctgatgaggtagccagttatcatcccacacatctatctttttgccatctcc 435  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524581 ttctgatatcaatgttattggttggcttagagacagttttgaatccattctgatgaggtagccagttatcatcccacacatctatctttttgccatctcc 6524482  T
Q  436 aattaacgagcaacccccttttttgataatccaatttgtgtggtagatactgctccaaacaaaactaggttgattacccaatttagcttttaaaacatct 535  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524481 aattaaccagcgacccccttttttgataatccactttgtgtggtagatactgctccaaacaaaactaggttgattacccaatttagcttttaaaacatct 6524382  T
Q  536 gtattggggaagtgtttggcttttaggcaagt 567  Q
    ||||||||||||||||||||||||||||||||    
T  6524381 gtattggggaagtgtttggcttttaggcaagt 6524350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 29322032 - 29321939
Alignment:
Q  120 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 214  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||| | ||||| | |||||||||||||    
T  29322032 aaattataaaatgtgtgaaattact-aaatgcccataccacatcagcagtggtagaaaggggtgtatagaaagagtggtttgtgtatctttttcc 29321939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 14106850 - 14106892
Alignment:
Q  120 aaattataaaatgtgtgaaattactgaaatgctcataccacat 162  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  14106850 aaattataaaatgtgtgaaattactaaaatgcccataccacat 14106892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 22362823 - 22362729
Alignment:
Q  120 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 214  Q
    ||||||||||||||||||||||||  |||||| |||||||||| |  ||||||| |||| ||||||||||| | |||||||||||||||||||||    
T  22362823 aaattataaaatgtgtgaaattacgaaaatgcccataccacatcattagtggtacaaaatggtgtatagaaagagtggtctatgtatctttttcc 22362729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 1493978 - 1494072
Alignment:
Q  120 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 214  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | |||||||| |||||||||||||||| | ||||| | |||||||||||||    
T  1493978 aaattataaaatgtgtgaaactactaaaatgcccataccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc 1494072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 12105402 - 12105459
Alignment:
Q  157 ccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 214  Q
    |||||| |||||||||| |||||||||||   || |||||||||||||||||||||||    
T  12105402 ccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttcc 12105459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 17641475 - 17641381
Alignment:
Q  120 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 214  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |  ||||||  ||| |||||||||||| | |||||||||||||||||||||    
T  17641475 aaattataaaatgtgtgaaattactaaaatgcccataccacattattagtggtgcaaaggggtgtatagaaagagtggtctatgtatctttttcc 17641381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 27008429 - 27008523
Alignment:
Q  120 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 214  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | |||||||| |||||||||||||||| | ||||| | |||||||||||||    
T  27008429 aaattataaaatgtgtgaaactactaaaatgcccataccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc 27008523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University