View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_12 (Length: 541)

Name: NF16757_low_12
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_12
NF16757_low_12
[»] chr4 (4 HSPs)
chr4 (10-524)||(45127776-45128284)
chr4 (10-55)||(19429805-19429850)
chr4 (17-69)||(47146047-47146099)
chr4 (35-63)||(51808811-51808839)
[»] chr8 (7 HSPs)
chr8 (414-524)||(23642351-23642461)
chr8 (19-65)||(2493041-2493087)
chr8 (27-69)||(3536860-3536902)
chr8 (371-421)||(23642264-23642314)
chr8 (36-65)||(567958-567987)
chr8 (10-59)||(39881646-39881695)
chr8 (27-63)||(27465464-27465500)
[»] chr1 (3 HSPs)
chr1 (372-444)||(51165803-51165875)
chr1 (17-66)||(5157175-5157224)
chr1 (17-61)||(15515659-15515703)
[»] chr2 (2 HSPs)
chr2 (17-69)||(28803445-28803497)
chr2 (27-63)||(35809980-35810016)
[»] chr3 (3 HSPs)
chr3 (368-432)||(13734453-13734517)
chr3 (27-68)||(36887639-36887680)
chr3 (15-63)||(44295628-44295676)
[»] chr7 (3 HSPs)
chr7 (28-59)||(25511741-25511772)
chr7 (27-68)||(5620068-5620109)
chr7 (35-63)||(25833430-25833458)
[»] chr6 (1 HSPs)
chr6 (17-57)||(3180996-3181036)
[»] chr5 (3 HSPs)
chr5 (35-63)||(2880467-2880495)
chr5 (27-67)||(6096660-6096700)
chr5 (17-57)||(13508543-13508583)


Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Complemental strand, 45128284 - 45127776
Alignment:
Q  10 aacaatatcacatgtggttatgcctgtagataagttcaaataagtcaatctaaataggccatatctccacaacaagaaggcatcaatttatagccagatg 109  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45128284 aacaatatcacatgtggttatgccggtagataagttcaaataagtcaatctaaataggccatatctccacaacaagaaggcatcaatttatagccagatg 45128185  T
Q  110 aaattttaatctggcttacaaaataacaatatgctaacatgtttgtttttctacctaatcgaataagagttatactctaatgaatttagaaaactcaacc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||    
T  45128184 aaattttaatctggcttacaaaataacaatatgctaacatgtttgtttttctacctaatcgaataa------tactctaatgaatttagaaaactcaacc 45128091  T
Q  210 tcactcacactacacccttataacaaagcaaaatttgatatataattaaggatttagcacaagnnnnnnnttcacatagccnnnnnnnntaaggaagggt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||        |||||||||||    
T  45128090 tcactcacactacacccttataacaaagcaaaatttgatatataattaaggatttagcacaagaaaaaaattcacatagccaaaaaaaataaggaagggt 45127991  T
Q  310 gaatttcttaccctgataagagcaattaataagaagagtaaaaatctcttctgaactcttggaatcactatcacacagcaaaatcctaactttactccta 409  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45127990 gaatttcttaccctgataagagcaattaataagaagagtaaaaacctcttctgaactcttggaatcactatcacacagcaaaatcctaactttactccta 45127891  T
Q  410 tcaatgaatccatcaccactcttgctattatttccaccacaattaagctctttactgtttaaatcaataagttcttcagtatccatctcaaatcaacccc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45127890 tcaatgaatccatcaccactcttgctattatttccaccacaattaagctctttactgtttaaatcaataagttcttcagtatccatctcaaatcaacccc 45127791  T
Q  510 tttaacctaaactac 524  Q
    |||||||||||||||    
T  45127790 tttaacctaaactac 45127776  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 19429805 - 19429850
Alignment:
Q  10 aacaatatcacatgtggttatgcctgtagataagttcaaataagtc 55  Q
    |||||| ||||||||| ||||||  |||||||||||||||||||||    
T  19429805 aacaatctcacatgtgcttatgcgagtagataagttcaaataagtc 19429850  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 47146047 - 47146099
Alignment:
Q  17 tcacatgtggttatgcctgtagataagttcaaataagtcaatctaaataggcc 69  Q
    ||||| ||| |||||||  || ||||||||||||||||||||| |||||||||    
T  47146047 tcacaagtgcttatgccaatatataagttcaaataagtcaatccaaataggcc 47146099  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 51808839 - 51808811
Alignment:
Q  35 gtagataagttcaaataagtcaatctaaa 63  Q
    |||||||||||||||||||||||||||||    
T  51808839 gtagataagttcaaataagtcaatctaaa 51808811  T

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Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 414 - 524
Target Start/End: Original strand, 23642351 - 23642461
Alignment:
Q  414 tgaatccatcaccactcttgctattatttccaccacaattaagctctttactgtttaaatcaataagttcttcagtatccatctcaaatcaaccccttta 513  Q
    ||||||||||| || ||||||  || ||||||||||||||||  ||||||||||| ||||||| |||||||||||||||| |||||||||||||| |||     
T  23642351 tgaatccatcatcattcttgccgttttttccaccacaattaacttctttactgttcaaatcaacaagttcttcagtatccttctcaaatcaacccatttg 23642450  T
Q  514 acctaaactac 524  Q
     ||||||||||    
T  23642451 gcctaaactac 23642461  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 2493041 - 2493087
Alignment:
Q  19 acatgtggttatgcctgtagataagttcaaataagtcaatctaaata 65  Q
    ||||||| ||||||| ||||||| ||||||||||||||||| |||||    
T  2493041 acatgtgtttatgccggtagatatgttcaaataagtcaatccaaata 2493087  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 3536902 - 3536860
Alignment:
Q  27 ttatgcctgtagataagttcaaataagtcaatctaaataggcc 69  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||    
T  3536902 ttatgccagtagataagctcaaataagacaatctaaataggcc 3536860  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 23642264 - 23642314
Alignment:
Q  371 gaatcactatcacacagcaaaatcctaactttactcctatcaatgaatcca 421  Q
    |||| ||||||||||||||||||||| |||||  | |||||||||||||||    
T  23642264 gaattactatcacacagcaaaatccttactttctttctatcaatgaatcca 23642314  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 567958 - 567987
Alignment:
Q  36 tagataagttcaaataagtcaatctaaata 65  Q
    ||||||||||||||||||||||||||||||    
T  567958 tagataagttcaaataagtcaatctaaata 567987  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 39881695 - 39881646
Alignment:
Q  10 aacaatatcacatgtggttatgcctgtagataagttcaaataagtcaatc 59  Q
    |||||| ||||| ||| |||||||  ||||||||||||||||||||||||    
T  39881695 aacaatctcacaagtgtttatgccaatagataagttcaaataagtcaatc 39881646  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 27465464 - 27465500
Alignment:
Q  27 ttatgcctgtagataagttcaaataagtcaatctaaa 63  Q
    |||||||  ||||||||||||||||||||||||||||    
T  27465464 ttatgccaatagataagttcaaataagtcaatctaaa 27465500  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 51165875 - 51165803
Alignment:
Q  372 aatcactatcacacagcaaaatcctaactttactcctatcaatgaatccatcaccactcttgctattatttcc 444  Q
    ||||||||||||||||||||||  | ||||||||  | ||||||||||||||||||||||| || ||||||||    
T  51165875 aatcactatcacacagcaaaatggttactttacttttgtcaatgaatccatcaccactctttcttttatttcc 51165803  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 5157175 - 5157224
Alignment:
Q  17 tcacatgtggttatgcctgtagataagttcaaataagtcaatctaaatag 66  Q
    ||||| ||| ||||| | ||||||||||||||||||||||||| ||||||    
T  5157175 tcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaatag 5157224  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 15515659 - 15515703
Alignment:
Q  17 tcacatgtggttatgcctgtagataagttcaaataagtcaatcta 61  Q
    ||||| ||| ||||||| ||||||||| |||||||||||||||||    
T  15515659 tcacacgtgtttatgccagtagataagctcaaataagtcaatcta 15515703  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 28803497 - 28803445
Alignment:
Q  17 tcacatgtggttatgcctgtagataagttcaaataagtcaatctaaataggcc 69  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||    
T  28803497 tcacatgtgcttatgccggtagataagctcaaataagtcaatccaaataggcc 28803445  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 35809980 - 35810016
Alignment:
Q  27 ttatgcctgtagataagttcaaataagtcaatctaaa 63  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  35809980 ttatgccggtagataagctcaaataagtcaatctaaa 35810016  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 432
Target Start/End: Original strand, 13734453 - 13734517
Alignment:
Q  368 ttggaatcactatcacacagcaaaatcctaactttactcctatcaatgaatccatcaccactctt 432  Q
    ||||||||| ||||||| ||||||||||| |||||||| |||||||  || ||||||||| ||||    
T  13734453 ttggaatcagtatcacaaagcaaaatcctcactttacttctatcaacaaaaccatcaccaatctt 13734517  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 36887639 - 36887680
Alignment:
Q  27 ttatgcctgtagataagttcaaataagtcaatctaaataggc 68  Q
    |||||| |||||||||| ||||||||| ||||||||||||||    
T  36887639 ttatgcttgtagataagctcaaataagccaatctaaataggc 36887680  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 44295628 - 44295676
Alignment:
Q  15 tatcacatgtggttatgcctgtagataagttcaaataagtcaatctaaa 63  Q
    ||||||| ||| |||||| |||||||||| ||||| |||||||||||||    
T  44295628 tatcacaagtgcttatgcttgtagataagctcaaacaagtcaatctaaa 44295676  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 25511741 - 25511772
Alignment:
Q  28 tatgcctgtagataagttcaaataagtcaatc 59  Q
    ||||||||||||||||||||||||||||||||    
T  25511741 tatgcctgtagataagttcaaataagtcaatc 25511772  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 5620109 - 5620068
Alignment:
Q  27 ttatgcctgtagataagttcaaataagtcaatctaaataggc 68  Q
    ||||||| |||||| |||||||||||||||||| ||||||||    
T  5620109 ttatgccagtagatgagttcaaataagtcaatccaaataggc 5620068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 25833430 - 25833458
Alignment:
Q  35 gtagataagttcaaataagtcaatctaaa 63  Q
    |||||||||||||||||||||||||||||    
T  25833430 gtagataagttcaaataagtcaatctaaa 25833458  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 3181036 - 3180996
Alignment:
Q  17 tcacatgtggttatgcctgtagataagttcaaataagtcaa 57  Q
    ||||| ||| ||||| |||||||||||||||||||||||||    
T  3181036 tcacaagtgcttatgtctgtagataagttcaaataagtcaa 3180996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 2880495 - 2880467
Alignment:
Q  35 gtagataagttcaaataagtcaatctaaa 63  Q
    |||||||||||||||||||||||||||||    
T  2880495 gtagataagttcaaataagtcaatctaaa 2880467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 6096660 - 6096700
Alignment:
Q  27 ttatgcctgtagataagttcaaataagtcaatctaaatagg 67  Q
    ||||||| ||||||||||||||||| ||||||| |||||||    
T  6096660 ttatgccagtagataagttcaaatacgtcaatccaaatagg 6096700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 13508543 - 13508583
Alignment:
Q  17 tcacatgtggttatgcctgtagataagttcaaataagtcaa 57  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  13508543 tcacaagtgtttatgccagtagataagttcaaataagtcaa 13508583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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