View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_13 (Length: 520)
Name: NF16757_low_13
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 45248173 - 45248572
Alignment:
| Q |
13 |
catcacatttactatagcttgtttaaattggtgcacattaactcatttgtctnnnnnnnnntcatagaaattaattttattaccttactcacttttttct |
112 |
Q |
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| T |
45248173 |
catcacatttactatagcttgtttaaattggtgcacattaactcatttgtctaaaaaaaaatcatagaaattaattttattaccttactcacttttttct |
45248272 |
T |
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| Q |
113 |
tttggtttacattaactaacttgtctcagctgtttccttacatagaaattaattttattagtgtactgtttaaaagtttgcatgcttgtcttctgtgttt |
212 |
Q |
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| T |
45248273 |
tttggtttacattaactaacttgtctcagctgtttccttacatagaaattaattttattagtgtactgtttaaaagtttgcatgcttgtcttctgtgttt |
45248372 |
T |
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| Q |
213 |
cttgccattactcatttttctcaagctgcaatttaaaatacactatattgtctaatgcataacataaagtcccactatggcactaacataaccgcttttg |
312 |
Q |
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| T |
45248373 |
cttgccattactcatttttctcaagctgcaatttaaaatacactatattgtctaatgcataacataaagtcccactatggcactaacataacagcttttg |
45248472 |
T |
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| Q |
313 |
tcatcattatcaagccaactttgtctaaatgtttaaagcatttgacaactgcagtatagaaaagcaactaagctatatatatcgctatgttcatatcaac |
412 |
Q |
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| T |
45248473 |
tcatcattatcaagccaactttgtctaaatgtttaaagcatttgacaaccgcagtaaagaaaagcaactaagctatatatatcgctatgttcatatcaac |
45248572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 387 - 505
Target Start/End: Original strand, 45248647 - 45248769
Alignment:
| Q |
387 |
atatatatcgctatgttcatatcaactaagctatgttcgtatcagcgtttaacatttgaacatttgaaactttcttcggcaaaataagggtaattttac- |
485 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45248647 |
atatatatcgtgatgttcatatcaactaagctatgttcgtatcagcgtttaacatttgaacatttgaaactttcttcggcaaaataagggtaattttaca |
45248746 |
T |
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| Q |
486 |
---attgtccctctccacatttt |
505 |
Q |
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| T |
45248747 |
ttaattgtccctctccacatttt |
45248769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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