View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_14 (Length: 463)
Name: NF16757_low_14
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 51526405 - 51526835
Alignment:
| Q |
14 |
ttattctcgaacaatttttatgcaatcctacatgagtgacgcaataaggccagaagggtggttagagtggaacggtaattttgctttgaacacattgtac |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51526405 |
ttattcgcgaacaatttttatgcaatcctacatgagtgacgcaataaggccagaagggtggttagagtggaacggtaattttgctttgaacacattgtac |
51526504 |
T |
|
| Q |
114 |
tacgctgaatacatgaactctggaccgggtgccggggtagctaaccgggtgaaatggtcaggataccatgtattgaatgattcgagtgaggctactaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51526505 |
tacgctgaatacatgaactctggaccgggtgccggggtagctaaccgggtgaaatggtcaggataccatgtattgaatgattcgagtgaggctactaaat |
51526604 |
T |
|
| Q |
214 |
tcactgtggctcaatttattgaggggaatctttggttaccttccaccggtgtaacttacacttctggtttgaaagtgtaaagtaaatttaacttgacaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51526605 |
tcactgtggctcaatttattgaggggaatctttggttaccttccaccggtgtaacttacacttctggtttgaaagtgtaaagtaaatttaacttgacaaa |
51526704 |
T |
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| Q |
314 |
ttaattcatgtatgtctaaatataaatattgtatttagtgattaaaagagttgttgtaattcacaacggttcttggtattgtatcaaagaaaaagtatgt |
413 |
Q |
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| T |
51526705 |
ttaattcatgtatgtctaaatat-aatattgtatttagtgattaaaagagttgttgtaattcacaacggttcttggtattgtatcaaagaaaaagtatgt |
51526803 |
T |
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| Q |
414 |
aaaagcaaaaggacacgggttactgttaaccc |
445 |
Q |
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| T |
51526804 |
aaaagcaaaaggacacgggttactgttaaccc |
51526835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 51532152 - 51532573
Alignment:
| Q |
14 |
ttattctcgaacaatttttatgcaatcctacatgagtgacgcaataaggccagaagggtggttagagtggaacggtaattttgctttgaacacattgtac |
113 |
Q |
| |
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|||||| ||||||||||| ||||||||||| |||||| |||| ||||| || ||||||||| |||||| || || | | ||| |||| | ||||||||| |
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| T |
51532152 |
ttattcgcgaacaattttcatgcaatcctatatgagtaacgcgataagtcccgaagggtggctagagtacaatggaagtgttggtttggatacattgtac |
51532251 |
T |
|
| Q |
114 |
tacgctgaatacatgaactctggaccgggtgccggggtagctaaccgggtgaaatggtcaggataccatgtattgaatgattcgagtgaggctactaaat |
213 |
Q |
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||| ||||||||||||||| ||||||||||| |||||||| || |||||||||||||| || ||||||||| ||||||||||||| |||||| || | |
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| T |
51532252 |
tacagtgaatacatgaactccggaccgggtgctggggtagcgaatcgggtgaaatggtctgggtaccatgtaatgaatgattcgagcgaggctgaaaagt |
51532351 |
T |
|
| Q |
214 |
tcactgtggctcaatttattgaggggaatctttggttaccttccaccggtgtaacttacacttctggtttgaaagtgtaaagtaaatttaacttgacaaa |
313 |
Q |
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| T |
51532352 |
ttactgtagctcaatttattttgggggatctttggttaccttccgctggagtaacttacactgcaggtttgacagtgtaaagtaaatttaact------- |
51532444 |
T |
|
| Q |
314 |
ttaattcatgtatgtctaaatataaatattgtatttagtgattaaaagagttgttgtaattcacaacggttcttggtattgtatcaaagaaaaagtatgt |
413 |
Q |
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| T |
51532445 |
taaaaccatgtatgtctcagtat-aatactgtatttagtgattaaacaa---gtgggaattcataacagttcttggtattgtatcaaagaaaaactatgt |
51532540 |
T |
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| Q |
414 |
aaaagcaaaa-ggacacgggttactgttaaccc |
445 |
Q |
| |
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|||| |||| ||| |||||||| | ||||||| |
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| T |
51532541 |
aaaattaaaacggagacgggttattattaaccc |
51532573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 19509562 - 19509492
Alignment:
| Q |
60 |
aggccagaagggtggttagagtggaacggtaattttgctttgaacacattgtactacgctgaatacatgaa |
130 |
Q |
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| T |
19509562 |
aggccagaagggtggttagaatggaatggagattttgcattggatacattgtattatgctgagtacatgaa |
19509492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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