View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_15 (Length: 462)
Name: NF16757_low_15
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_15 |
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| [»] scaffold0062 (6 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 77 - 452
Target Start/End: Complemental strand, 16447 - 16074
Alignment:
| Q |
77 |
aatttgaaccataaaattatagatacaaatgacgagattaattaacttatgagtaggctttgcaaaatatcctctaaaatgaaaggtttattctcattgg |
176 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16447 |
aatttgacccataaaattatagatgcaaatgacgagattaattaacctatgaggaggctttgcaaaatatcctctaaaacgaaaggtttattctcattgg |
16348 |
T |
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| Q |
177 |
gtagaggaattgtagagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttgg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16347 |
gtagaggaattgtagagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttgg |
16248 |
T |
|
| Q |
277 |
catcttgtctacataggctcaatgtgaagcttgtcggtgctaactcctggaaggactatactaggtttgtagtttcttgatacctggtcatagagtttta |
376 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16247 |
catcttgtctac--aggctcaatgtgaagcttgtcggtgctaactcctggaaggactatactaggtttgtagtttcttgatacctggtcatagagtttta |
16150 |
T |
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| Q |
377 |
gaaagtcgttaagtgtggatacagcattagattggttgtagaactggtagttaacccaatttatattggcctcatt |
452 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16149 |
gaaagtcgtcaagtgtggatacagctttagattggttgtagaactggtagttaacccaatttatattggcctcatt |
16074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 77 - 452
Target Start/End: Complemental strand, 26615 - 26242
Alignment:
| Q |
77 |
aatttgaaccataaaattatagatacaaatgacgagattaattaacttatgagtaggctttgcaaaatatcctctaaaatgaaaggtttattctcattgg |
176 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26615 |
aatttgacccataaaattatagatgcaaatgacgagattaattaacctatgaggaggctttgcaaaatatcctctaaaacgaaaggtttattctcattgg |
26516 |
T |
|
| Q |
177 |
gtagaggaattgtagagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttgg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26515 |
gtagaggaattgtagagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttgg |
26416 |
T |
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| Q |
277 |
catcttgtctacataggctcaatgtgaagcttgtcggtgctaactcctggaaggactatactaggtttgtagtttcttgatacctggtcatagagtttta |
376 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26415 |
catcttgtctac--aggctcaatgtgaagcttgtcggtgctaactcctggaaggactatactaggtttgtagtttcttgatacctggtcatagagtttta |
26318 |
T |
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| Q |
377 |
gaaagtcgttaagtgtggatacagcattagattggttgtagaactggtagttaacccaatttatattggcctcatt |
452 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26317 |
gaaagtcgtcaagtgtggatacagctttagattggttgtagaactggtagttaacccaatttatattggcctcatt |
26242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 77 - 452
Target Start/End: Complemental strand, 36781 - 36408
Alignment:
| Q |
77 |
aatttgaaccataaaattatagatacaaatgacgagattaattaacttatgagtaggctttgcaaaatatcctctaaaatgaaaggtttattctcattgg |
176 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36781 |
aatttgacccataaaattatagatgcaaatgacgagattaattaacctatgaggaggctttgcaaaatatcctctaaaacgaaaggtttattctcattgg |
36682 |
T |
|
| Q |
177 |
gtagaggaattgtagagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttgg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36681 |
gtagaggaattgtagagtcatcagcgttccaaagaaaaacaccagggagtgatgctatctggaggagatgtctgcagccagcaatgaagtgctcccttgg |
36582 |
T |
|
| Q |
277 |
catcttgtctacataggctcaatgtgaagcttgtcggtgctaactcctggaaggactatactaggtttgtagtttcttgatacctggtcatagagtttta |
376 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36581 |
catcttgtctac--aggctcaatgtgaagcttgtcggtgctaactcctggaaggactatactaggtttgtagtttcttgatacctggtcatagagtttta |
36484 |
T |
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| Q |
377 |
gaaagtcgttaagtgtggatacagcattagattggttgtagaactggtagttaacccaatttatattggcctcatt |
452 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36483 |
gaaagtcgtcaagtgtggatacagctttagattggttgtagaactggtagttaacccaatttatattggcctcatt |
36408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 16570 - 16501
Alignment:
| Q |
6 |
ataaacacacatgaaataagtagaaaatgaaattgcacacatgggtcttatttaacatataataatagac |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
16570 |
ataaacacacatgaaataagtagaaaatgaaattgcacacataggtcttatttaaaatataataagagac |
16501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 26738 - 26669
Alignment:
| Q |
6 |
ataaacacacatgaaataagtagaaaatgaaattgcacacatgggtcttatttaacatataataatagac |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
26738 |
ataaacacacatgaaataagtagaaaatgaaattgcacacataggtcttatttaaaatataataagagac |
26669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 36904 - 36835
Alignment:
| Q |
6 |
ataaacacacatgaaataagtagaaaatgaaattgcacacatgggtcttatttaacatataataatagac |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
36904 |
ataaacacacatgaaataagtagaaaatgaaattgcacacataggtcttatttaaaatataataagagac |
36835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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