View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_16 (Length: 457)
Name: NF16757_low_16
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 38741229 - 38740809
Alignment:
| Q |
16 |
atgaatcgggaaaatttgaagctggaggctacaaatggtatacattaatatatatgttcctgataaaaaataatttcatgaattataattttggtctcta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38741229 |
atgaatcgggaaaatttgaagctggaggctacaaatggtatacataa---tatatgttcctgataaaaaataatttcatgaattataattttggtctcta |
38741133 |
T |
|
| Q |
116 |
attcatagtgaatgaatatgttaaaaatgtgtttaaacctcacaggaagttagttatgtaccaaagtggaaacaaaagcaagaatgtaaaggattatatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38741132 |
attcatagtgaatgaatatgttaaaaatgtgtttaaacctcacaggaagttagttatgtaccaaagtggaaacaaaagcaagaatgtaaaggattatatt |
38741033 |
T |
|
| Q |
216 |
tcactatactacaaagaatcaaatacaccgtatatgttataaaagaatgtagttgcattggagcctcaaataaatcaaagaatcaaatgaaattagcaat |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38741032 |
tcactatactacaaagaatcaaatacaccatatatgttataaaagaatgtagttgcattggagcctcaaataaatcaaagaatcaaatgaaattagcaat |
38740933 |
T |
|
| Q |
316 |
agtacaaattaactacaccttgtcaatcctacaatctatgagtgtaacaatcttccatttatctacatgtctatattctaaatggactttgacatcccaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
38740932 |
agtacaaattaactacaccttgtcaatcctacaatctatgagtgtaacaatcttccatttatctacatgtctatattctaattggactttaacatcccaa |
38740833 |
T |
|
| Q |
416 |
gtcttctactcttaacgtgaaaaa |
439 |
Q |
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| T |
38740832 |
gtcttctactcttaacgtgaaaaa |
38740809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 247 - 418
Target Start/End: Original strand, 51007768 - 51007934
Alignment:
| Q |
247 |
atatgttataaaagaatgtagttgcattggagcctcaaataaatcaaagaatcaaatgaaattagcaatagtacaaattaactacaccttgtcaatccta |
346 |
Q |
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|||||||||| |||||||||||||| |||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
51007768 |
atatgttatacaagaatgtagttgctttggag------atgaatcaaagaatcaaagaaaattagcaatagtacaaatcaactacaccttgtcaatcctg |
51007861 |
T |
|
| Q |
347 |
caatctatgagtgtaacaatcttccatttatctacatgtctatattctaaatggac-tttgacatcccaagtc |
418 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
51007862 |
caatctatgagtgtaacaatcttcaatttacctacatgtctatattctaattggacgtttgacataccaagtc |
51007934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 51006427 - 51006633
Alignment:
| Q |
16 |
atgaatcgggaaaatttgaagctggaggctacaaatggtatacattaa----tatatatgttcctgataaaaaataatttcatgaattataattttggtc |
111 |
Q |
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|||||||||| | ||||||||||||||| |||||||||||||| || |||||||||| ||||||||| ||||||||||||| |||||||||||| |
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| T |
51006427 |
atgaatcggggaggtttgaagctggaggccacaaatggtatacaatatacattatatatgtttttgataaaaa-taatttcatgaatgataattttggtc |
51006525 |
T |
|
| Q |
112 |
tctaattcatagtgaatgaatatgttaaaaatgtgtttaaacctcacaggaagttagttatgtaccaaagtggaaacaaaagcaagaatgtaaaggatta |
211 |
Q |
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| |||| ||||||||||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |
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| T |
51006526 |
cat--ttca----gaatgaatatgttaaaaatgtatttatacctcacaggaagttagttttgtacccaagtggaaacaaaagcaagaatgtaaaggatca |
51006619 |
T |
|
| Q |
212 |
tatttcactatact |
225 |
Q |
| |
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|||||||||||||| |
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|
| T |
51006620 |
tatttcactatact |
51006633 |
T |
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