View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_17 (Length: 454)
Name: NF16757_low_17
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_17 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 454
Target Start/End: Original strand, 43096517 - 43096961
Alignment:
| Q |
11 |
gagatgaatcaaataggtttaactcctgatgcttattgctacaatgttgtaattcaaggtttatgtgatgtaagtcttttgaatcgagcacagtctcttc |
110 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43096517 |
gagatgaatcaaataggtttaactcatgatgcttattgctacaatgttgtaattcaaggtttatgtgatgtaggtcttttgaatcgagcacagtctcttc |
43096616 |
T |
|
| Q |
111 |
atcttaaaatttccaagcacaatgtttgcacgcacacaattctcatatgtgaaatgtgtaagcgaggaatggttgctgaggcaaaagaattatttaatcg |
210 |
Q |
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||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
43096617 |
atcttgaaatttccgagcgcaatgtttgcacgcacacaattctcatatgtgaaatgtgtaagtgaggaatggttgttgaggcaaaagaattatttaatcg |
43096716 |
T |
|
| Q |
211 |
gatggagaagcttggatgtgaactttcggttgtgaccttcaatgcgcttataaatggact-tgcaaagctaaaaatcttgaggaagcaatgaatttattt |
309 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43096717 |
gatggagaagcttggatgtgaactttcgattgtgaccttcaatgcgcttataaatggactgtgcaaagctaaaaatcttgaggaagcaatgaatttattt |
43096816 |
T |
|
| Q |
310 |
tacaagatggacgtcgggagaaaatattcgtttcgcttcaatctttctcagggttctggtcaggtttctgatggtgctagtctccagaaaaaggtgaagg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43096817 |
tacaagatggacgtcgggagaaaatattcgtttcgcttcagtctttctcaaggttcttgtcaagtttctgatggtgctagtctccagaaaaaggtgaagg |
43096916 |
T |
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| Q |
410 |
aaatgtgtgaggcgggacaaattttgaaggcttacaagttaatca |
454 |
Q |
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| T |
43096917 |
aaatgtgtgaggcgggacaaattttgaaggcttacaagttaatca |
43096961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 454
Target Start/End: Complemental strand, 17488041 - 17487597
Alignment:
| Q |
11 |
gagatgaatcaaataggtttaactcctgatgcttattgctacaatgttgtaattcaaggtttatgtgatgtaagtcttttgaatcgagcacagtctcttc |
110 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17488041 |
gagatgactcagataggtttaactcctgatgcttattgctacaatgctgtaattcaaggtttatgtgatgtaggtcttttgaatcgagcacagtctcttc |
17487942 |
T |
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| Q |
111 |
atcttaaaatttccaagcacaatgtttgcacgcacacaattctcatatgtgaaatgtgtaagcgaggaatggttgctgaggcaaaagaattatttaatcg |
210 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17487941 |
gtcttgaaatttccgagcacaatgtttgcacgcacacaattctcatatgtgaaatgtgtaagcgaggaatggttgctgaggcacaagaattatttaatca |
17487842 |
T |
|
| Q |
211 |
gatggagaagcttggatgtgaactttcggttgtgaccttcaatgcgcttataaatggact-tgcaaagctaaaaatcttgaggaagcaatgaatttattt |
309 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||| ||||||||| |
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| T |
17487841 |
aatggagaagcttggatgtgaaccttcggttgtgaccttcaatacgcttataaatggactgtgcaaagctaataatcttgagaaagcaaaaaatttattt |
17487742 |
T |
|
| Q |
310 |
tacaagatggacgtcgggagaaaatattcgtttcgcttcaatctttctcagggttctggtcaggtttctgatggtgctagtctccagaaaaaggtgaagg |
409 |
Q |
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| |||| |||| |||||||||| | ||||||| | | ||| ||||||||||||||||||||||||||||||| |||| || |||| |||||||| ||||| |
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| T |
17487741 |
tgcaagttggaggtcgggagaagacattcgttacacctcagtctttctcagggttctggtcaggtttctgatagtgccaggctcctgaaaaaggcgaagg |
17487642 |
T |
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| Q |
410 |
aaatgtgtgaggcgggacaaattttgaaggcttacaagttaatca |
454 |
Q |
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| T |
17487641 |
aaatgtgtgaggcgggacaaattttgagggcttacaagttaatca |
17487597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 454
Target Start/End: Original strand, 6779037 - 6779481
Alignment:
| Q |
11 |
gagatgaatcaaataggtttaactcctgatgcttattgctacaatgttgtaattcaaggtttatgtgatgtaagtcttttgaatcgagcacagtctcttc |
110 |
Q |
| |
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||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6779037 |
gagatgactcagataggtttaactcctgattcttattgctacaatgctgtaattcaaggtttatgtgatgtagatcttttgaatcgagcacagtctctta |
6779136 |
T |
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| Q |
111 |
atcttaaaatttccaagcacaatgtttgcacgcacacaattctcatatgtgaaatgtgtaagcgaggaatggttgctgaggcaaaagaattatttaatcg |
210 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6779137 |
gtcttgaaatttccgagcacaatgtttgcacgcacacaattctcatatgtgaaatgtgtaagcgaggaatggttgctgaggcacaagaattatttaatca |
6779236 |
T |
|
| Q |
211 |
gatggagaagcttggatgtgaactttcggttgtgaccttcaatgcgcttataaatggact-tgcaaagctaaaaatcttgaggaagcaatgaatttattt |
309 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
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| T |
6779237 |
aatggagaagcttggatgtgaaccttcggttgtgaccttcaatacgcttataaatggactgtgcaaagctaaaaatcttgagaaagcaaaaaatttattt |
6779336 |
T |
|
| Q |
310 |
tacaagatggacgtcgggagaaaatattcgtttcgcttcaatctttctcagggttctggtcaggtttctgatggtgctagtctccagaaaaaggtgaagg |
409 |
Q |
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| |||| |||| || ||||||| | ||||||| | | ||| ||||||||||||||||||||||||||||||| |||| || |||| |||||||| |||| |
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| T |
6779337 |
tgcaagttggaggttgggagaagacattcgttacacctcagtctttctcagggttctggtcaggtttctgatagtgccaggctcctgaaaaaggcaaagg |
6779436 |
T |
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| Q |
410 |
aaatgtgtgaggcgggacaaattttgaaggcttacaagttaatca |
454 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6779437 |
aaatgtgtgaggcgggacaaattttgagggcttacaagttaatca |
6779481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 453
Target Start/End: Original strand, 22423608 - 22424052
Alignment:
| Q |
10 |
tgagatgaatcaaataggtttaactcctgatgcttattgctacaatgttgtaattcaaggtttatgtgatgtaagtcttttgaatcgagcacagtctctt |
109 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
22423608 |
tgagatgactcagataggtttaactcctgatgcttattgctacaatgctgtaattcaaggtttatgtgatgtaggtcttttgaatcgagcacattctctt |
22423707 |
T |
|
| Q |
110 |
catcttaaaatttccaagcacaatgtttgcacgcacacaattctcatatgtgaaatgtgtaagcgaggaatggttgctgaggcaaaagaattatttaatc |
209 |
Q |
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| T |
22423708 |
cttcttgaaatttctgagcacaatgtttgcacgcacacaattctcatatgtgaaatgtgtaagcgaggaatggttgctgaggcacaagaattatttaatc |
22423807 |
T |
|
| Q |
210 |
ggatggagaagcttggatgtgaactttcggttgtgaccttcaatgcgcttataaatggact-tgcaaagctaaaaatcttgaggaagcaatgaatttatt |
308 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||| | |||||| |
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| T |
22423808 |
aaatggagaagcttggatgtgaaccttcggttgtgaccttcaatacgcttataaatggactgtgcaaagctaataatcttgagaaagcaaaaattttatt |
22423907 |
T |
|
| Q |
309 |
ttacaagatggacgtcgggagaaaatattcgtttcgcttcaatctttctcagggttctggtcaggtttctgatggtgctagtctccagaaaaaggtgaag |
408 |
Q |
| |
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|| |||| |||| |||||||||| | |||||| | | ||| ||||||||| ||||||||||||||||||||| |||| || |||| |||||||| |||| |
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| T |
22423908 |
ttgcaagttggaggtcgggagaagactttcgttacacctcagtctttctcaaggttctggtcaggtttctgatagtgccaggctcctgaaaaaggcgaag |
22424007 |
T |
|
| Q |
409 |
gaaatgtgtgaggcgggacaaattttgaaggcttacaagttaatc |
453 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
22424008 |
gaaatgtgtgaggcaggacaaattttgagggcttacaagttaatc |
22424052 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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