View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16757_low_18 (Length: 453)
Name: NF16757_low_18
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 36675140 - 36674708
Alignment:
| Q |
1 |
gcaatttagtatgacccacctatgatacccactactgttcgagcaatttctgcagtactcatttttcctagattttgcaactgaaattacaaatttgagt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36675140 |
gcaaattagtatgacccacctatgatacccactgctgttcgagcaatttctgcagtactcatttttcctagattttgcaactgaaattacaaatttgagt |
36675041 |
T |
|
| Q |
101 |
ctataacactcactctcgattcttgagaatatagtataaacttataaatgcacgaatttaattgtattaggtagatcatgtatattgcatgtgttgtgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36675040 |
ctataacactcactctcgattcttgagaatatagtataaacttataaatgcactaatttaattgtattaggtagatcatgtatattgcatgtgttgtgac |
36674941 |
T |
|
| Q |
201 |
taattgtgagggagtatgtacggtggtattcgtcctataaatagagaaaagtttgattgagcatatgattgagaaattaagttcatttgatggcagttgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36674940 |
taattgtgagggagtatgtacggtggtattcgtcctataaatagagaaaagtttgattgagcatatgattgagaaattaagttcatttgatggcagttgg |
36674841 |
T |
|
| Q |
301 |
cactgtgtgttaagatactgatcatctactagccactatgacagagccgccaacgtccatttctcatagacatggctgtgggctgtcacagtttttcgca |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36674840 |
cactgtgt-ttaagatactgatcatctactagccactatgatagagccgccaacgtccatttctcatagacatggctgtgggctgtcacagtttttcgca |
36674742 |
T |
|
| Q |
401 |
ctgatttctatgcatgctaggttcccccttaatc |
434 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |
|
|
| T |
36674741 |
ctgatttctatgcttgctacgttcccccttaatc |
36674708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University