View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_19 (Length: 440)

Name: NF16757_low_19
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_19
NF16757_low_19
[»] chr2 (1 HSPs)
chr2 (150-440)||(38566452-38566731)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 150 - 440
Target Start/End: Original strand, 38566452 - 38566731
Alignment:
Q  150 ttgctacaacaattgtcacccatctcaggactgtcaccaatgctaaacatgcttggttattcacaccttgaatggtctcacaactgaataatgtga--tt 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||  ||    
T  38566452 ttgctacaacaattgttacccatctcaggactgtcaccaatgctaaacatgcttggttattcaca-----------------actgaataatgtgagatt 38566534  T
Q  248 gcagttgctcttcgaagtagagaaagtcccattgaatttgctgaactccatgagaaactcatggactttgataggttgttgcatcgtgaggaaccaacta 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  38566535 gcagttgctcttcgaagtagagaaagtcccattgaatttgctgaactccatgagaaacccatggactttgataggttgctgcatcgtgaggaaccaacta 38566634  T
Q  348 tgtc----atattctctagttgttactccaaatgcagcaacgagatcctgcggccaacaacatcagcctaaacggacctaatcatactgcaagaaat 440  Q
    ||||    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  38566635 tgtcatatatattctctagttgttactgcaaatgcagcaacaagatcctgcggccaacaacatcagccaaaacagacctaatcatactgcaagaaat 38566731  T

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