View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_20 (Length: 439)
Name: NF16757_low_20
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 66 - 425
Target Start/End: Complemental strand, 26920507 - 26920148
Alignment:
| Q |
66 |
gggtttcctccattttcttcatccaagaacaaacagcaacaacaaagttctcagatgagtgatgaagatgaaccaaattttccagctgaagaaagctctg |
165 |
Q |
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| T |
26920507 |
gggtttcctccattttcttcatccaagaacaaacagcaacaacaaagttctcagatgagtgatgaagatgaaccaaattttccagctgaagaaagctctg |
26920408 |
T |
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| Q |
166 |
gtggtgacccaaaaaggaagatttcaccatggcaaagaatgaaatggactgatacaatggtaaggctattgataatggctgtttattacattggtgatga |
265 |
Q |
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| T |
26920407 |
gtggtgacccaaaaaggaagatttcaccatggcaaagaatgaaatggactgatacaatggtaaggctattgataatggctgtttattacattggtgatga |
26920308 |
T |
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| Q |
266 |
agctggttctgaagggactgatccaaataagaaaaagtctagtggtgtgttacagaagaagggaaagtggaaatctgtttcaagggctatgatggaaaaa |
365 |
Q |
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| T |
26920307 |
agctggttctgaagggactgatccaaataagaaaaagtctagtggtttgttacagaagaagggaaagtggaaatctgtttcaagggctatgatggaaaaa |
26920208 |
T |
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| Q |
366 |
gggttttaagtttcacctcgacaatgtgaagataagtttaatgattttaataaaaggtat |
425 |
Q |
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| T |
26920207 |
gggttttatgtgtcacctcaacaatgtgaagataagtttaatgatttgaataaaaggtat |
26920148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 425
Target Start/End: Original strand, 41824834 - 41825136
Alignment:
| Q |
123 |
agtgatgaagatgaaccaaattttccagctgaagaaagctctggtggtgacccaaaaaggaagatttcaccatggcaaagaatgaaatggactgatacaa |
222 |
Q |
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| T |
41824834 |
agtgatgaagatgaaccatgttttggagcagatgaaacctctgttggtgacccaaaaagaaaaggatcaccatggcatagaatgaaatggacagatacaa |
41824933 |
T |
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| Q |
223 |
tggtaaggctattgataatggctgtttattacattggtgatgaagctggttctgaagggactga-tccaaataagaaaaagtctagtggtgtgttacaga |
321 |
Q |
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| T |
41824934 |
tggtaagactcttaataatggctgtttattacattggtgatgaagctggtacttca-gaattaagtgctgataaaaagaaagctaatggtttattacaaa |
41825032 |
T |
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| Q |
322 |
agaagggaaagtggaaatctgtttcaagggctatgatggaaaaagggttttaagtttcacctcgacaatgtgaagataagtttaatgattttaataaaag |
421 |
Q |
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| T |
41825033 |
agaaagggaaatggaaatcagtttccaaaggaatgatggaaaaagggtactatgtttcacctcaacaatgtgaagacaagttcaatgatttgaacaaaag |
41825132 |
T |
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| Q |
422 |
gtat |
425 |
Q |
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|||| |
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| T |
41825133 |
gtat |
41825136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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