View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_21 (Length: 438)
Name: NF16757_low_21
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 261 - 421
Target Start/End: Complemental strand, 4795937 - 4795777
Alignment:
| Q |
261 |
agaaaacaaatgaatatgtaacagttatattatagataaacaaacgttcctcatccccatatcttgatatcttcttatctttatctataataatcttcac |
360 |
Q |
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| T |
4795937 |
agaaaacaaataaatatgtaacagttatattatagataaacaaacgttcctcatccccatatcttgatatcttcttatctttatctataataatcttcac |
4795838 |
T |
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| Q |
361 |
aatatattcaattaaatatctgcacaatcttataaactagcaagagttcgatattagctcc |
421 |
Q |
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| T |
4795837 |
actatattcaattaaacatctgcacaatcttataaactagcaagagttcgatatttgctcc |
4795777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 39634740 - 39634940
Alignment:
| Q |
41 |
ttataaaacaataaatcaattgtattaaatttccaccacgaacgc-aaaagctactcatacca-cttcgatgggaatggctttagg-tgtcaaattcaat |
137 |
Q |
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| T |
39634740 |
ttataaaacaataaatcaattgtgatgaattcccacct-gaacgccaaaagctacccgtagcagcttcgactggaatgacttttgggtgtcaaactcaat |
39634838 |
T |
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| Q |
138 |
tttaaaaatagctatccaaacaccaa-ttttttagtaggatcacttttaggatggctagattcacgtttgcagcttcccaccgcacaaccaaacaagtac |
236 |
Q |
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| T |
39634839 |
tttaaaaatggctacccaaacaccaatttttttagcagattcacttttaggatggttaaactcacgtttgcagttccccaccgcataaccaaacgagtac |
39634938 |
T |
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| Q |
237 |
tt |
238 |
Q |
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|| |
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| T |
39634939 |
tt |
39634940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 37887433 - 37887471
Alignment:
| Q |
131 |
attcaattttaaaaatagctatccaaacaccaatttttt |
169 |
Q |
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| T |
37887433 |
attcaattttaaaaatagttatccaaacaccaatttttt |
37887471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 2484483 - 2484698
Alignment:
| Q |
26 |
atagagagcatccgcttataaaacaataaatcaattgtattaaatttccaccacgaacgcaaaagctactcatacca-cttcgatgggaatggctttagg |
124 |
Q |
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| T |
2484483 |
atagagagcacccagttataaaacaataaattaattgtgatgaattcccaccgtgaacacaaaagctacccatagcagcttcgactgaaatcacttttgg |
2484582 |
T |
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| Q |
125 |
tg-tcaaattcaattttaaaaatagctatccaaacaccaatttttt-agtaggatcacttttaggatggctagattcacgtttgcagcttcccaccgcac |
222 |
Q |
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| T |
2484583 |
gggtcaaactcaattttaaaaatagctacccaaacaccaatttttttagcagattcacttttaggatggctagactcacgtttgcagttctccaccgcat |
2484682 |
T |
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| Q |
223 |
aaccaaacaagtactt |
238 |
Q |
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| T |
2484683 |
aaccaaacgagtactt |
2484698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 3748268 - 3748304
Alignment:
| Q |
133 |
tcaattttaaaaatagctatccaaacaccaatttttt |
169 |
Q |
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| T |
3748268 |
tcaattttaaaaatagttacccaaacaccaatttttt |
3748304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 230
Target Start/End: Original strand, 3619701 - 3619848
Alignment:
| Q |
85 |
caaaagctactcatacca-cttcgatgggaatggcttt-aggtgtcaaattcaattttaaaaatagctatccaaacaccaattttttagtaggatcactt |
182 |
Q |
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||||||||||| |||||| |||| || ||||| ||||| || || || | |||||||||||||| |||| ||||||||||||||||||| | |||||| |
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| T |
3619701 |
caaaagctactaataccagcttcaattggaattgcttttagatgccagactcaattttaaaaatggctacccaaacaccaattttttagcaaactcactt |
3619800 |
T |
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| Q |
183 |
ttaggatggctagattcacgtttgcagcttcccaccgcacaaccaaac |
230 |
Q |
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| T |
3619801 |
ttaagatatttaaactcacgtttacagctccccaccacgcaaccaaac |
3619848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 37699085 - 37699122
Alignment:
| Q |
133 |
tcaattttaaaaatagctatccaaacaccaatttttta |
170 |
Q |
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| T |
37699085 |
tcaattttaaaaatagttatccaaacaccaatttttta |
37699122 |
T |
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