View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_22 (Length: 437)
Name: NF16757_low_22
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 33292041 - 33291686
Alignment:
| Q |
11 |
attctggtggaagtttttatgtagttggtaagaaattatttctgtgggttgagtacttgtactttatttcggtatgtcattttattaccacttaattata |
110 |
Q |
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| T |
33292041 |
attctggtggaagtttttttgtagttggtaagaaattatttcggtgggttgagtacttgtactttatttcggtatgtcattttattaccacttaattag- |
33291943 |
T |
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| Q |
111 |
attagtaataatnnnnnnntattaaaaattatatatgtggttgagttcgggttggctttaataaacaatccaaaattcaaccaaatcattgtgatttcat |
210 |
Q |
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| T |
33291942 |
--taataataa--aacaaatattaaaaattatatatgtggttgagttcaggttggctttaataaacaatccaaaattcaaccaaatcattgtgatttcat |
33291847 |
T |
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| Q |
211 |
aaaagaaagtttatatacatgtccaataaaaatctattttcatatcattaagagtaaaccttataactttcatcaagtcttcttttacaggtcttgtgtt |
310 |
Q |
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| T |
33291846 |
aaaagaaagtttatatacatgttcaataaaaatctattttcatatcattaagagtaaaccttataactttcatcaagtcttcttttacaggtcttgtgtt |
33291747 |
T |
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| Q |
311 |
ggaaggcttttccatttatgtaatataattcattttgacttattaaaaaaattattttact |
371 |
Q |
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| T |
33291746 |
ggaaggcttttccgtttatgtaatatgattcatattgacttattaaaaaaattattttact |
33291686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 361
Target Start/End: Complemental strand, 16241220 - 16241190
Alignment:
| Q |
331 |
taatataattcattttgacttattaaaaaaa |
361 |
Q |
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| T |
16241220 |
taatataattcattttgacttattaaaaaaa |
16241190 |
T |
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