View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_24 (Length: 428)
Name: NF16757_low_24
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_24 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 3 - 419
Target Start/End: Complemental strand, 15886682 - 15886269
Alignment:
| Q |
3 |
attttgttgacgttgatctgtgttaagagttatcttcttttttgtttcaattattgtttgctctgtactcatttttcattaaagtagatgttgaaaaatg |
102 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15886682 |
attttgttgacgttgatatgtgttaagagttatcttctttgttgtttcaattattgtttgctctgtactcatttttcattaaagtagatgttgaaaaatg |
15886583 |
T |
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| Q |
103 |
tatttaatgaggtagatgttgagttctctaattggttttctgacttgagttttggtctagtcccccaagtgtctttgcatctttattttcttttcttaat |
202 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15886582 |
tatttaatgaggtagatgttgagttctct---tggttttctgacttgagttttggtctagtcccccaagtgtctttgcatctttattttcttttcttaat |
15886486 |
T |
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| Q |
203 |
aatatttcttgagtgttgcagtcaataggggcaactaaggctctctttggattatttaaaactgtcggagcatagcgggatggaatagaatggaatggag |
302 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
15886485 |
aatatttcttgagtgttgcagtcgataggggcaactaaggctctctttggattatttaaaactgacggagcatagtgggatggaatagaatggaatggag |
15886386 |
T |
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| Q |
303 |
attccattccactatttacatttttcatgatggaatggaatagagtactcatctcattgtttggaaagtagaccgagaggaatgagttataactttttca |
402 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15886385 |
attccattccactatttacatatttcatgatggaatggaatagagtactcatctcattgtttggaaagtagatcgagaggaatgagttataactttttca |
15886286 |
T |
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| Q |
403 |
ttccatttttgcctttg |
419 |
Q |
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| T |
15886285 |
ttccatttttgcctttg |
15886269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Original strand, 43546 - 43589
Alignment:
| Q |
357 |
cattgtttggaaagtagaccgagaggaatgagttataacttttt |
400 |
Q |
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| T |
43546 |
cattgtttggaaagtagacagaacggaatgagttataacttttt |
43589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Original strand, 77266 - 77309
Alignment:
| Q |
357 |
cattgtttggaaagtagaccgagaggaatgagttataacttttt |
400 |
Q |
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| T |
77266 |
cattgtttggaaagtagacagaacggaatgagttataacttttt |
77309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 50859459 - 50859404
Alignment:
| Q |
357 |
cattgtttggaaagtagaccgagaggaatgagttataactttttcattccattttt |
412 |
Q |
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|||| |||||||||| ||| || |||||||||||||||||||| ||||||||||| |
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| T |
50859459 |
cattatttggaaagtggacggaatggaatgagttataacttttttattccattttt |
50859404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 31229058 - 31228997
Alignment:
| Q |
357 |
cattgtttggaaagtagaccgagaggaatgagttataactttttcattccatttttgccttt |
418 |
Q |
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||||||||||||||| ||| || ||||||||||||||| |||| |||||| |||| ||||| |
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| T |
31229058 |
cattgtttggaaagttgacggaacggaatgagttataacatttttattccaattttaccttt |
31228997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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