View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_26 (Length: 426)
Name: NF16757_low_26
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 13615740 - 13615337
Alignment:
| Q |
18 |
gttttgaactgaggaatttccacctaatcatttgcggggttttaattgctccaaatcctcctcaaatatccaacgataaccacaattctttaccttaaca |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13615740 |
gttttgaactgaggaatttccaactaatcatttgcgggggtttaattgctccaaatcctcctcaaatatccaacgataaccacaactctttaccttaaca |
13615641 |
T |
|
| Q |
118 |
cgcaaaccggggactttcccaacttcagctgccaattcaagaccactgctaatatcaaaatccaatgtttcagacttaaagtgttccttactgataaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13615640 |
cgcaaaccggggactttcccaacttcagctgccaattcaagaccactgctaatatcaaaatccaatgtttcagacttaaagtgttccttactgataaaac |
13615541 |
T |
|
| Q |
218 |
gtaacaacaggtgatctaaatcaactgtaatcagatctttttcaagatgtacgggaatatagttgaaagagctcattcctgctggttcatcttgaaaacc |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13615540 |
gtagcaacaggtgatctaaatcaactgtaatcagatctttttcaacatgtacgggaatatagttgaaagagctcattcctgctggttcatcttgaaaacc |
13615441 |
T |
|
| Q |
318 |
gagaccgaaccaactaagacgctttattccttcacctaaactatttggatcatcatgtgctacaaatgttaagcaacaagccacaccaatccagttcttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13615440 |
gagaccgaaccaactaagacgctttattccttcacctaaactatttggatcatcatgtgctacaaatgttaagcaacaagccacaccaatgcagttcttt |
13615341 |
T |
|
| Q |
418 |
tcac |
421 |
Q |
| |
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|||| |
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| T |
13615340 |
tcac |
13615337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 31304864 - 31304762
Alignment:
| Q |
58 |
tttaattgctccaaatcctcctcaaatatccaacgataaccacaattctttaccttaacacgcaaaccggggactttcccaacttcagctgccaattcaa |
157 |
Q |
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||||||||||||| |||||||||||||||||| | |||||||| |||||||||| || | ||||||||||||||| || ||| |||||||||||||||| |
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| T |
31304864 |
tttaattgctccagatcctcctcaaatatccatctgtaaccacagttctttacctcaaaatgcaaaccggggacttgccaaacatcagctgccaattcaa |
31304765 |
T |
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| Q |
158 |
gac |
160 |
Q |
| |
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||| |
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| T |
31304764 |
gac |
31304762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 31304726 - 31304676
Alignment:
| Q |
340 |
tttattccttcacctaaactatttggatcatcatgtgctacaaatgttaag |
390 |
Q |
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| T |
31304726 |
tttattccttcacctaaactatttggatcatcatgtgctacaaatgttaag |
31304676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 31213582 - 31213496
Alignment:
| Q |
18 |
gttttgaactgaggaatttccacc-ta-atcatttgcggggttttaattgctccaaatcctcctcaaatatccaacgataaccacaatt |
104 |
Q |
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| T |
31213582 |
gttttgaaccgaggaatttccaccgtacatcatttgtggg--tttaattgctccaaatcctccttaaatatccatcgataacctcaatt |
31213496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 31247787 - 31247733
Alignment:
| Q |
222 |
caacaggtgatctaaatcaactgtaatcagatctttttcaagatgtacgggaata |
276 |
Q |
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||||| |||||||||||||||||| | |||||||||| ||||||||| ||||||| |
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| T |
31247787 |
caacaagtgatctaaatcaactgtgaccagatcttttccaagatgtatgggaata |
31247733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 31248002 - 31247912
Alignment:
| Q |
22 |
tgaactgaggaatttccacc-ta-atcatttgcggggttttaattgctccaaatcctcctcaaatatccaacgataaccacaattctttacct |
112 |
Q |
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||||||||||||||||||| || |||||||| ||| ||||| || |||| |||||||| |||||||||| ||||||||||||| ||||||| |
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| T |
31248002 |
tgaactgaggaatttccactgtacatcatttgtggg--tttaaatgttccagatcctccttaaatatccaatgataaccacaattttttacct |
31247912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 31213248 - 31213206
Alignment:
| Q |
348 |
ttcacctaaactatttggatcatcatgtgctacaaatgttaag |
390 |
Q |
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|||||||||| || |||||||||||||||||||||| |||||| |
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| T |
31213248 |
ttcacctaaattagttggatcatcatgtgctacaaaagttaag |
31213206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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