View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_28 (Length: 413)
Name: NF16757_low_28
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 493196 - 493041
Alignment:
| Q |
14 |
aggggaggaagtcattagaattattgttaccgtaaaccacttgggttggcaattgacgcggatgttggcttgagacttttgaatgtgctcctcctcaaaa |
113 |
Q |
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| T |
493196 |
aggggaggaagtcattagaattattgttaccgtaaaccacttgggttggcaattgaggcggatattggcttgagactttagaatgtgctcctcctcaaaa |
493097 |
T |
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| Q |
114 |
tctcacattcaattctctccgattgcaaattaggtgggctaaatactcatatatat |
169 |
Q |
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| T |
493096 |
tctcacattcaattctctccgattgcaaattaggtgggctaaatactcatatatat |
493041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 492058 - 491984
Alignment:
| Q |
329 |
agaaatattagtttgtgtttaagccaattgagcacatctggatcagaaaaaactcaacagtgatgaagcctagag |
403 |
Q |
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| T |
492058 |
agaaatgttagtttgtgtttaagccaattgagcacatctggatcagaaaaaactcaacagtgatgaagcctagag |
491984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 492158 - 492087
Alignment:
| Q |
269 |
catgtagaaaataaaatgacgaaagttgatgcatatatgattagaagagttccatggaccagaaatattagt |
340 |
Q |
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| T |
492158 |
catgtagaaaataacatgacgaaagttgatgcatatatgattagaagagttccatggaccagaaatattagt |
492087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 492819 - 492784
Alignment:
| Q |
236 |
cttgattcaaggggaacaaccacgaaggaaatacat |
271 |
Q |
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| T |
492819 |
cttgattcaaggggaacaaccacgaaggaaatacat |
492784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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