View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_3 (Length: 710)
Name: NF16757_low_3
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 18 - 700
Target Start/End: Complemental strand, 45595958 - 45595276
Alignment:
| Q |
18 |
caaggaactacggattatcaggtaatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaa |
117 |
Q |
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| T |
45595958 |
caaggaactacggattatcaggtaatgatgcttcaaaattctgtcaaattttcagtttaatttttcttcctgatgtttgaaatgactaacatgaaccaaa |
45595859 |
T |
|
| Q |
118 |
cttacagagagaatactacttattggaaaagaaagcacatcaatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaat |
217 |
Q |
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| T |
45595858 |
cttacagagagaatactacttattggaaaagaaagcacatcgatccaaaagaagagagggccaaagggtattgtcccttaactccaaaggaagttggaat |
45595759 |
T |
|
| Q |
218 |
tttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgc |
317 |
Q |
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| T |
45595758 |
tttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgc |
45595659 |
T |
|
| Q |
318 |
tatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttattt |
417 |
Q |
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| T |
45595658 |
tatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactggtttcttattt |
45595559 |
T |
|
| Q |
418 |
aatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgt |
517 |
Q |
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| T |
45595558 |
aatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgt |
45595459 |
T |
|
| Q |
518 |
atctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttct |
617 |
Q |
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| T |
45595458 |
atctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgggagaggaagaaccatttct |
45595359 |
T |
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| Q |
618 |
ccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgcttct |
700 |
Q |
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| T |
45595358 |
ccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattcattatccctaatgtttgcctttgcttct |
45595276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 27151508 - 27151335
Alignment:
| Q |
167 |
agaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgct |
266 |
Q |
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|||| ||||| ||||||||| ||| |||||||| |||||||||||||||||||| |||| |||||||||||| || ||||||| || |||||||||||| |
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| T |
27151508 |
agaacagaggtccaaagggttttgccccttaacaccaaaggaagttggaatttttcttactgctcttggatatccatcaaagacgccgatatatattgct |
27151409 |
T |
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| Q |
267 |
gcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
340 |
Q |
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| T |
27151408 |
gctggagagatttatgggggtgagtcccatatggctgaactgcgatcccgttatccattgttaatgagcaaggt |
27151335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 432 - 598
Target Start/End: Complemental strand, 27149117 - 27148951
Alignment:
| Q |
432 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
531 |
Q |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
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| Q |
532 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgg |
598 |
Q |
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|||||||| ||| ||||| |||| |||||||| | || |||||||| ||||| ||||||||||| |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgttttcttgg |
27148951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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