View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_30 (Length: 404)
Name: NF16757_low_30
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 44069609 - 44069230
Alignment:
| Q |
19 |
caattccgtttaaagggaatcctagttagttgcaactgatctagtggtcacctggtagataatatattcattcccaataataatcatatccaactagcgc |
118 |
Q |
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| T |
44069609 |
caataccgtttaaagggaatcctagttagttgcaactgatctagtggtcacctggtagataatatattcattcccaataataatcatatccaactagcgc |
44069510 |
T |
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| Q |
119 |
ataaacaaggagaaactannnnnnnnn-atgaggaaagagaggagggttttacataccaatagatgttcagcgtttcgcttataatgctcagccttactt |
217 |
Q |
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| T |
44069509 |
ataaacaaggagaaactattttttttttatgaggaaagagaggagggttttacataccaatagatgttcagcgtttcgcttataatgctcagccttactt |
44069410 |
T |
|
| Q |
218 |
ccagaaaccaatgaagccaaccttataagatttaacgcggagacagagttccctgagggttctgccccgtcatggtcttccttcacacggagaagaaccg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069409 |
ccagaaaccaatgaagccaaccttataagatttaacgcggagacagagttccctgagggttctgccccgtcatggtcttccttcacacggagaagaaccg |
44069310 |
T |
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| Q |
318 |
aagaatcttctcccgtattattgaaatatccaccaccatccttgtcaagaaacaaagtatcctgcaagcagttcatctca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069309 |
aagaatcttctcccgtattattgaaatatccaccaccatccttgtcaagaaacaaagtatcctgcaagcagttcatctca |
44069230 |
T |
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