View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16757_low_31 (Length: 401)
Name: NF16757_low_31
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_31 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 165 - 401
Target Start/End: Complemental strand, 22801608 - 22801370
Alignment:
| Q |
165 |
tataacacacccatccatttttatgcaggtgtgcattaacatgtaacacctttttaattggacattagaaacccttttctctctcttcaattgtgatcta |
264 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
22801608 |
tataacacacccatccatttttaggaaggtgtgcagtagcatgtaacacctttttaattggacattaaaaacccttttctctctcttcaattgtgaccta |
22801509 |
T |
|
| Q |
265 |
ttgaatgcctct-aaagtaattttcatacccaaacctcaatttctctctcttgctctcatttctttcggccaatcattctggtggatagaagaaaagctg |
363 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22801508 |
ttgaatgcctcttaaagtaattttcatacccaaacctcaatttctctctcttgctctcatttctttcggccaatcattctggtggatagaagaaaagctg |
22801409 |
T |
|
| Q |
364 |
gtacattta-nnnnnnnataaagaaaagctggtactttt |
401 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |
|
|
| T |
22801408 |
gtacatttatttttttaataaagaaaagctggtactttt |
22801370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 313
Target Start/End: Original strand, 22800897 - 22801047
Alignment:
| Q |
165 |
tataacacacccatccatttttatgcaggtgtgcattaacatgtaacacctttttaattggacattagaaa--cccttttctctctcttcaattgtgatc |
262 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| ||| | ||| || ||||| ||| ||||||| || ||| | |||||||||||||| |||||| ||| |
|
|
| T |
22800897 |
tataacacacccatttatttttatgaaggtgtacatcagcatacaataccttattatttggacactaaaaaaactcttttctctctctttaattgttatc |
22800996 |
T |
|
| Q |
263 |
tattgaatgcctctaaagtaattttcatacccaaacctcaatttctctctc |
313 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
22800997 |
tattaaatgtctctaaagtaattttcatacccaatccccattttctctctc |
22801047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 35263697 - 35263541
Alignment:
| Q |
12 |
gagatgaatgttggatttcctaaaaatgcatatataacttattcactgagaagtctgtcatttagtttcagcttgaaatacttaagttgtactttgtaac |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35263697 |
gagatgaatgttggatttcctaaaacggcatatataacttattcactgagaagtctgtcatttagtttcagcttgaaatacttaagttgtgctttgtaac |
35263598 |
T |
|
| Q |
112 |
agcctccaatttttagttaacgtcctgcattgttaatttatcgaccttatatatata |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35263597 |
agcctccaatttttagttaacgtcctgcattgttaatttatcgaccttatatatata |
35263541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 35271113 - 35270972
Alignment:
| Q |
13 |
agatgaatgttggatttcctaaaaatgcatatataacttattcactgagaagtctgtcatttagtttcagcttgaaatacttaagttgtactttgtaaca |
112 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||| ||||| |
|
|
| T |
35271113 |
agatgaatgttggatttcctgaaacggcatatataacttattcactgagaagtctgtcatttagtttcagtttgaaatacttgagttatgcttggtaacg |
35271014 |
T |
|
| Q |
113 |
gcctccaatttttagttaacg-tcctgcattgttaatttatc |
153 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
35271013 |
atctccaatttttagttaacgatcctgcactgttaatttatc |
35270972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 35252748 - 35252616
Alignment:
| Q |
25 |
gatttcctaaaaatgcatatataacttattcactgagaagtctgtcat--ttagtttcagcttgaaatacttaagttgtactttgt-aacagcctccaat |
121 |
Q |
| |
|
||||||||| || |||||||||||||| | | ||||| ||||||||| | |||||| |||||||||||| |||| | |||||| ||||||||||||| |
|
|
| T |
35252748 |
gatttcctataatagcatatataacttactaattgagatgtctgtcataatcagtttcgacttgaaatacttcagttattctttgttaacagcctccaat |
35252649 |
T |
|
| Q |
122 |
ttttagttaacg-tcctgcattgttaatttatc |
153 |
Q |
| |
|
|||||||||||| |||| | |||||||||||| |
|
|
| T |
35252648 |
ttttagttaacgaacctgtactgttaatttatc |
35252616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 36392349 - 36392256
Alignment:
| Q |
165 |
tataacacacccatccatttttatgcaggtgtgcattaacatgtaacacctttttaattggacattagaaacccttttctctctcttcaattgtg |
259 |
Q |
| |
|
|||||||||||||| || |||| || ||||||| |||||||| |||||||||| |||| || ||| |||| ||| |||||||||| ||||||| |
|
|
| T |
36392349 |
tataacacacccatacacttttgtgaaggtgtgttttaacatgaaacaccttttcaattacac-ttaaaaactcttatctctctctttaattgtg |
36392256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 4355879 - 4355774
Alignment:
| Q |
166 |
ataacacacccatccatttttatgcaggtgtgcattaacatgtaacacctttttaattggacattagaaacccttttctctctcttcaattgtgatctat |
265 |
Q |
| |
|
|||| ||||| ||| ||||||||| |||||| |||| |||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
4355879 |
ataatacacctatctatttttatgaaggtgtatattagcatgcaacaccttattatttggacactaaaaacccttttctctctcttcaattgtgatctat |
4355780 |
T |
|
| Q |
266 |
tgaatg |
271 |
Q |
| |
|
| |||| |
|
|
| T |
4355779 |
taaatg |
4355774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 50953733 - 50953781
Alignment:
| Q |
180 |
catttttatgcaggtgtgcattaacatgtaacacctttttaattggaca |
228 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
50953733 |
catttttatgaaggtgtgcattagcatgaaacacctttttaattggaca |
50953781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 19429190 - 19429135
Alignment:
| Q |
204 |
catgtaacacctttttaattggacattagaaacccttttctctctcttcaattgtg |
259 |
Q |
| |
|
|||| ||||||||| |||||||||| || || |||||| ||||||||||||||||| |
|
|
| T |
19429190 |
catgaaacacctttataattggacactaaaagccctttcctctctcttcaattgtg |
19429135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University